Analysis of interatomic Contacts of Structural Units in PDB entry:
9E0F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E0F entry

There are 4 chains in PDB entry 9E0F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
V	ASP 394	PHE 767
Z	PRO 541	PHE 767
U	ARG 476	VAL 912
Y	GLU 9	VAL 912

There are 59 helices in PDB entry 9E0F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	V	396	407	Right-handed alpha
Helix 2	AA2	V	435	445	Right-handed alpha
Helix 3	AA3	V	481	487	Right-handed alpha
Helix 4	AA4	V	491	499	Right-handed alpha
Helix 5	AA5	V	521	532	Right-handed alpha
Helix 6	AA6	V	565	575	Right-handed alpha
Helix 7	AA7	V	589	598	Right-handed alpha
Helix 8	AA8	V	613	620	Right-handed alpha
Helix 9	AA9	V	650	663	Right-handed alpha
Helix 10	AB1	V	683	695	Right-handed alpha
Helix 11	AB2	V	751	760	Right-handed alpha
Helix 12	AB3	V	760	766	Right-handed alpha
Helix 13	AB4	Z	565	574	Right-handed alpha
Helix 14	AB5	Z	587	598	Right-handed alpha
Helix 15	AB6	Z	612	620	Right-handed alpha
Helix 16	AB7	Z	645	663	Right-handed alpha
Helix 17	AB8	Z	683	695	Right-handed alpha
Helix 18	AB9	Z	753	760	Right-handed alpha
Helix 19	AC1	Z	760	767	Right-handed alpha
Helix 20	AC2	U	477	485	Right-handed alpha
Helix 21	AC3	U	489	493	Right-handed 310
Helix 22	AC4	U	514	525	Right-handed alpha
Helix 23	AC5	U	560	567	Right-handed alpha
Helix 24	AC6	U	570	578	Right-handed alpha
Helix 25	AC7	U	600	611	Right-handed alpha
Helix 26	AC8	U	627	631	Right-handed 310
Helix 27	AC9	U	644	654	Right-handed alpha
Helix 28	AD1	U	666	677	Right-handed alpha
Helix 29	AD2	U	691	698	Right-handed alpha
Helix 30	AD3	U	725	728	Right-handed 310
Helix 31	AD4	U	729	742	Right-handed alpha
Helix 32	AD5	U	762	774	Right-handed alpha
Helix 33	AD6	U	814	819	Right-handed alpha
Helix 34	AD7	U	860	868	Right-handed alpha
Helix 35	AD8	U	881	892	Right-handed alpha
Helix 36	AD9	U	894	903	Right-handed alpha
Helix 37	AE1	U	904	908	Right-handed 310
Helix 38	AE2	Y	82	88	Right-handed alpha
Helix 39	AE3	Y	88	107	Right-handed alpha
Helix 40	AE4	Y	125	138	Right-handed alpha
Helix 41	AE5	Y	144	149	Right-handed 310
Helix 42	AE6	Y	477	484	Right-handed alpha
Helix 43	AE7	Y	489	493	Right-handed 310
Helix 44	AE8	Y	514	525	Right-handed alpha
Helix 45	AE9	Y	560	566	Right-handed alpha
Helix 46	AF1	Y	571	578	Right-handed alpha
Helix 47	AF2	Y	600	611	Right-handed alpha
Helix 48	AF3	Y	644	654	Right-handed alpha
Helix 49	AF4	Y	666	677	Right-handed alpha
Helix 50	AF5	Y	686	690	Right-handed 310
Helix 51	AF6	Y	691	698	Right-handed alpha
Helix 52	AF7	Y	725	728	Right-handed 310
Helix 53	AF8	Y	729	742	Right-handed alpha
Helix 54	AF9	Y	762	774	Right-handed alpha
Helix 55	AG1	Y	814	819	Right-handed alpha
Helix 56	AG2	Y	860	869	Right-handed alpha
Helix 57	AG3	Y	881	892	Right-handed alpha
Helix 58	AG4	Y	894	903	Right-handed alpha
Helix 59	AG5	Y	904	908	Right-handed 310

There are 15 sheets in PDB entry 9E0F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	467	469	first strand
Strand 2	V	478	480	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	512	513	first strand
Strand 2	V	516	517	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	578	584	first strand
Strand 2	V	555	560	parallel
Strand 3	V	624	627	parallel
Strand 4	V	673	679	parallel
Strand 5	V	713	717	anti-parallel
Strand 6	V	699	701	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	603	605	first strand
Strand 2	Z	578	584	parallel
Strand 3	Z	555	560	parallel
Strand 4	Z	624	627	parallel
Strand 5	Z	673	678	parallel
Strand 6	Z	714	716	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	504	505	first strand
Strand 2	U	512	513	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	546	548	first strand
Strand 2	U	557	559	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	591	592	first strand
Strand 2	U	595	596	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	682	684	first strand
Strand 2	U	657	663	parallel
Strand 3	U	634	639	parallel
Strand 4	U	703	707	parallel
Strand 5	U	752	758	parallel
Strand 6	U	791	796	anti-parallel
Strand 7	U	778	781	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	823	825	first strand
Strand 2	U	850	852	anti-parallel
Strand 3	U	856	857	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	62	66	first strand
Strand 2	Y	51	56	anti-parallel
Strand 3	Y	29	36	anti-parallel
Strand 4	Y	21	26	anti-parallel
Strand 5	Y	70	72	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	504	505	first strand
Strand 2	Y	512	513	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	546	548	first strand
Strand 2	Y	557	559	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	591	592	first strand
Strand 2	Y	595	596	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	681	684	first strand
Strand 2	Y	657	663	parallel
Strand 3	Y	634	639	parallel
Strand 4	Y	703	705	parallel
Strand 5	Y	752	758	parallel
Strand 6	Y	791	796	anti-parallel
Strand 7	Y	778	781	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	824	825	first strand
Strand 2	Y	850	851	anti-parallel
Strand 3	Y	856	857	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E0F

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E0F