Analysis of interatomic Contacts of Structural Units in PDB entry:
9E1J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E1J entry

There are 4 chains in PDB entry 9E1J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	SER 256
B	LEU 6	HIS 424
C	GLY 1	SER 256
D	LEU 6	HIS 424

There are 66 helices in PDB entry 9E1J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	23	Right-handed alpha
Helix 2	AA2	A	25	30	Right-handed 310
Helix 3	AA3	A	62	75	Right-handed alpha
Helix 4	AA4	A	83	89	Right-handed alpha
Helix 5	AA5	A	90	94	Right-handed 310
Helix 6	AA6	A	98	108	Right-handed alpha
Helix 7	AA7	A	121	125	Right-handed 310
Helix 8	AA8	A	138	150	Right-handed alpha
Helix 9	AA9	A	161	169	Right-handed alpha
Helix 10	AB1	A	173	178	Right-handed alpha
Helix 11	AB2	A	183	187	Right-handed 310
Helix 12	AB3	A	195	199	Right-handed 310
Helix 13	AB4	A	218	226	Right-handed alpha
Helix 14	AB5	A	229	242	Right-handed alpha
Helix 15	AB6	A	246	256	Right-handed alpha
Helix 16	AB7	B	44	49	Right-handed alpha
Helix 17	AB8	B	53	59	Right-handed alpha
Helix 18	AB9	B	60	65	Right-handed 310
Helix 19	AC1	B	68	84	Right-handed alpha
Helix 20	AC2	B	89	115	Right-handed alpha
Helix 21	AC3	B	116	122	Right-handed alpha
Helix 22	AC4	B	125	131	Right-handed 310
Helix 23	AC5	B	133	156	Right-handed alpha
Helix 24	AC6	B	174	201	Right-handed alpha
Helix 25	AC7	B	205	209	Right-handed 310
Helix 26	AC8	B	243	247	Right-handed alpha
Helix 27	AC9	B	271	280	Right-handed alpha
Helix 28	AD1	B	281	284	Right-handed 310
Helix 29	AD2	B	285	293	Right-handed alpha
Helix 30	AD3	B	294	298	Right-handed 310
Helix 31	AD4	B	304	329	Right-handed alpha
Helix 32	AD5	B	330	332	Right-handed 310
Helix 33	AD6	B	376	395	Right-handed alpha
Helix 34	AD7	B	400	415	Right-handed alpha
Helix 35	AD8	B	418	423	Right-handed alpha
Helix 36	AD9	C	15	22	Right-handed alpha
Helix 37	AE1	C	63	75	Right-handed alpha
Helix 38	AE2	C	89	93	Right-handed 310
Helix 39	AE3	C	98	108	Right-handed alpha
Helix 40	AE4	C	121	125	Right-handed 310
Helix 41	AE5	C	138	150	Right-handed alpha
Helix 42	AE6	C	161	169	Right-handed alpha
Helix 43	AE7	C	173	179	Right-handed alpha
Helix 44	AE8	C	183	187	Right-handed 310
Helix 45	AE9	C	229	231	Right-handed 310
Helix 46	AF1	C	232	237	Right-handed alpha
Helix 47	AF2	C	237	242	Right-handed alpha
Helix 48	AF3	C	246	253	Right-handed alpha
Helix 49	AF4	C	254	256	Right-handed 310
Helix 50	AF5	D	46	50	Right-handed 310
Helix 51	AF6	D	54	59	Right-handed alpha
Helix 52	AF7	D	60	65	Right-handed 310
Helix 53	AF8	D	68	85	Right-handed alpha
Helix 54	AF9	D	89	113	Right-handed alpha
Helix 55	AG1	D	116	122	Right-handed 310
Helix 56	AG2	D	125	130	Right-handed alpha
Helix 57	AG3	D	133	154	Right-handed alpha
Helix 58	AG4	D	174	201	Right-handed alpha
Helix 59	AG5	D	205	209	Right-handed 310
Helix 60	AG6	D	271	280	Right-handed alpha
Helix 61	AG7	D	281	283	Right-handed 310
Helix 62	AG8	D	284	293	Right-handed alpha
Helix 63	AG9	D	304	330	Right-handed alpha
Helix 64	AH1	D	381	397	Right-handed alpha
Helix 65	AH2	D	400	414	Right-handed alpha
Helix 66	AH3	D	418	423	Right-handed alpha

There are 12 sheets in PDB entry 9E1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	3	9	parallel
Strand 3	A	51	57	parallel
Strand 4	A	76	82	parallel
Strand 5	A	130	132	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	21	27	anti-parallel
Strand 3	B	30	37	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	168	169	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	218	first strand
Strand 2	B	230	233	anti-parallel
Strand 3	B	238	240	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	228	first strand
Strand 2	B	345	353	anti-parallel
Strand 3	B	356	364	anti-parallel
Strand 4	B	369	375	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	260	263	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	38	first strand
Strand 2	C	3	9	parallel
Strand 3	C	51	57	parallel
Strand 4	C	76	82	parallel
Strand 5	C	130	132	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	116	120	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	22	26	anti-parallel
Strand 3	D	31	36	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	368	375	anti-parallel
Strand 3	D	359	364	anti-parallel
Strand 4	D	345	350	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	218	first strand
Strand 2	D	230	233	anti-parallel
Strand 3	D	237	240	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	253	first strand
Strand 2	D	256	262	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E1J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E1J