Analysis of interatomic Contacts of Structural Units in PDB entry:
9E28

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E28 entry

There are 16 chains in PDB entry 9E28 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 27	GLN 198
B	SER 27	GLN 373
C	SER 27	GLN 373
D	GLU 184	ALA 612
E	MET 1	GLU 96
F	MET 1	GLU 96
G	VAL 27	GLN 198
H	GLU 184	ALA 612
d	MET 1	GLY 89
e	HIS 210	LYS 1404
f	HIS 210	LYS 1404
g	ILE 110	ALA 140
h	ILE 110	ALA 140
i	MET 1	GLY 89
k	VAL 13	ILE 113
v	VAL 13	ILE 113

There are155 helices in PDB entry 9E28. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	34	Right-handed alpha
Helix 2	AA2	A	37	41	Right-handed 310
Helix 3	AA3	A	49	57	Right-handed alpha
Helix 4	AA4	A	58	71	Right-handed alpha
Helix 5	AA5	A	144	156	Right-handed alpha
Helix 6	AA6	A	157	168	Right-handed alpha
Helix 7	AA7	A	179	198	Right-handed alpha
Helix 8	AA8	B	28	48	Right-handed alpha
Helix 9	AA9	B	66	75	Right-handed alpha
Helix 10	AB1	B	112	114	Right-handed 310
Helix 11	AB2	B	115	120	Right-handed alpha
Helix 12	AB3	B	121	123	Right-handed 310
Helix 13	AB4	B	127	131	Right-handed 310
Helix 14	AB5	B	141	164	Right-handed alpha
Helix 15	AB6	B	166	183	Right-handed alpha
Helix 16	AB7	B	233	235	Right-handed 310
Helix 17	AB8	B	236	243	Right-handed alpha
Helix 18	AB9	B	247	266	Right-handed alpha
Helix 19	AC1	B	279	293	Right-handed alpha
Helix 20	AC2	B	304	308	Right-handed 310
Helix 21	AC3	B	316	326	Right-handed alpha
Helix 22	AC4	B	358	373	Right-handed alpha
Helix 23	AC5	C	28	44	Right-handed alpha
Helix 24	AC6	C	45	47	Right-handed 310
Helix 25	AC7	C	66	76	Right-handed alpha
Helix 26	AC8	C	112	116	Right-handed 310
Helix 27	AC9	C	118	123	Right-handed alpha
Helix 28	AD1	C	141	164	Right-handed alpha
Helix 29	AD2	C	166	183	Right-handed alpha
Helix 30	AD3	C	233	235	Right-handed 310
Helix 31	AD4	C	236	243	Right-handed alpha
Helix 32	AD5	C	247	266	Right-handed alpha
Helix 33	AD6	C	279	291	Right-handed alpha
Helix 34	AD7	C	316	325	Right-handed alpha
Helix 35	AD8	C	335	340	Right-handed 310
Helix 36	AD9	C	358	373	Right-handed alpha
Helix 37	AE1	D	185	192	Right-handed alpha
Helix 38	AE2	D	193	212	Right-handed alpha
Helix 39	AE3	D	581	609	Right-handed alpha
Helix 40	AE4	E	2	13	Right-handed alpha
Helix 41	AE5	E	35	61	Right-handed alpha
Helix 42	AE6	F	2	12	Right-handed alpha
Helix 43	AE7	F	35	61	Right-handed alpha
Helix 44	AE8	G	28	38	Right-handed alpha
Helix 45	AE9	G	49	57	Right-handed alpha
Helix 46	AF1	G	58	71	Right-handed alpha
Helix 47	AF2	G	144	156	Right-handed alpha
Helix 48	AF3	G	156	168	Right-handed alpha
Helix 49	AF4	G	179	198	Right-handed alpha
Helix 50	AF5	H	185	193	Right-handed alpha
Helix 51	AF6	H	193	212	Right-handed alpha
Helix 52	AF7	H	225	232	Right-handed alpha
Helix 53	AF8	H	233	236	Right-handed 310
Helix 54	AF9	H	574	579	Right-handed alpha
Helix 55	AG1	H	583	609	Right-handed alpha
Helix 56	AG2	d	14	32	Right-handed alpha
Helix 57	AG3	d	34	50	Right-handed alpha
Helix 58	AG4	e	211	223	Right-handed alpha
Helix 59	AG5	e	233	238	Right-handed alpha
Helix 60	AG6	e	238	261	Right-handed alpha
Helix 61	AG7	e	270	294	Right-handed alpha
Helix 62	AG8	e	294	307	Right-handed alpha
Helix 63	AG9	e	309	319	Right-handed alpha
Helix 64	AH1	e	321	331	Right-handed alpha
Helix 65	AH2	e	340	347	Right-handed alpha
Helix 66	AH3	e	349	370	Right-handed alpha
Helix 67	AH4	e	373	400	Right-handed alpha
Helix 68	AH5	e	405	441	Right-handed alpha
Helix 69	AH6	e	456	483	Right-handed alpha
Helix 70	AH7	e	513	533	Right-handed alpha
Helix 71	AH8	e	539	575	Right-handed alpha
Helix 72	AH9	e	577	589	Right-handed alpha
Helix 73	AI1	e	590	592	Right-handed 310
Helix 74	AI2	e	596	625	Right-handed alpha
Helix 75	AI3	e	630	639	Right-handed alpha
Helix 76	AI4	e	642	670	Right-handed alpha
Helix 77	AI5	e	672	675	Right-handed 310
Helix 78	AI6	e	676	693	Right-handed alpha
Helix 79	AI7	e	695	710	Right-handed alpha
Helix 80	AI8	e	740	757	Right-handed alpha
Helix 81	AI9	e	761	798	Right-handed alpha
Helix 82	AJ1	e	805	822	Right-handed alpha
Helix 83	AJ2	e	828	867	Right-handed alpha
Helix 84	AJ3	e	870	891	Right-handed alpha
Helix 85	AJ4	e	895	927	Right-handed alpha
Helix 86	AJ5	e	974	995	Right-handed alpha
Helix 87	AJ6	e	999	1004	Right-handed 310
Helix 88	AJ7	e	1013	1018	Right-handed alpha
Helix 89	AJ8	e	1020	1024	Right-handed 310
Helix 90	AJ9	e	1030	1055	Right-handed alpha
Helix 91	AK1	e	1057	1063	Right-handed alpha
Helix 92	AK2	e	1064	1073	Right-handed alpha
Helix 93	AK3	e	1075	1092	Right-handed alpha
Helix 94	AK4	e	1109	1156	Right-handed alpha
Helix 95	AK5	e	1162	1200	Right-handed alpha
Helix 96	AK6	e	1210	1264	Right-handed alpha
Helix 97	AK7	e	1271	1305	Right-handed alpha
Helix 98	AK8	e	1313	1349	Right-handed alpha
Helix 99	AK9	e	1355	1371	Right-handed alpha
Helix 100	AL1	e	1374	1380	Right-handed alpha
Helix 101	AL2	e	1380	1404	Right-handed alpha
Helix 102	AL3	f	211	223	Right-handed alpha
Helix 103	AL4	f	228	233	Right-handed alpha
Helix 104	AL5	f	233	238	Right-handed alpha
Helix 105	AL6	f	238	262	Right-handed alpha
Helix 106	AL7	f	270	294	Right-handed alpha
Helix 107	AL8	f	294	307	Right-handed alpha
Helix 108	AL9	f	309	321	Right-handed alpha
Helix 109	AM1	f	321	333	Right-handed alpha
Helix 110	AM2	f	339	347	Right-handed alpha
Helix 111	AM3	f	349	370	Right-handed alpha
Helix 112	AM4	f	373	400	Right-handed alpha
Helix 113	AM5	f	405	441	Right-handed alpha
Helix 114	AM6	f	457	485	Right-handed alpha
Helix 115	AM7	f	513	533	Right-handed alpha
Helix 116	AM8	f	539	574	Right-handed alpha
Helix 117	AM9	f	577	589	Right-handed alpha
Helix 118	AN1	f	590	592	Right-handed 310
Helix 119	AN2	f	597	625	Right-handed alpha
Helix 120	AN3	f	630	639	Right-handed alpha
Helix 121	AN4	f	642	670	Right-handed alpha
Helix 122	AN5	f	676	693	Right-handed alpha
Helix 123	AN6	f	694	710	Right-handed alpha
Helix 124	AN7	f	740	757	Right-handed alpha
Helix 125	AN8	f	761	798	Right-handed alpha
Helix 126	AN9	f	800	804	Right-handed 310
Helix 127	AO1	f	805	822	Right-handed alpha
Helix 128	AO2	f	828	867	Right-handed alpha
Helix 129	AO3	f	870	891	Right-handed alpha
Helix 130	AO4	f	895	927	Right-handed alpha
Helix 131	AO5	f	974	995	Right-handed alpha
Helix 132	AO6	f	1000	1004	Right-handed 310
Helix 133	AO7	f	1013	1018	Right-handed alpha
Helix 134	AO8	f	1019	1023	Right-handed 310
Helix 135	AO9	f	1030	1056	Right-handed alpha
Helix 136	AP1	f	1058	1063	Right-handed alpha
Helix 137	AP2	f	1064	1073	Right-handed alpha
Helix 138	AP3	f	1075	1093	Right-handed alpha
Helix 139	AP4	f	1109	1156	Right-handed alpha
Helix 140	AP5	f	1162	1200	Right-handed alpha
Helix 141	AP6	f	1210	1231	Right-handed alpha
Helix 142	AP7	f	1232	1234	Right-handed 310
Helix 143	AP8	f	1235	1265	Right-handed alpha
Helix 144	AP9	f	1266	1269	Right-handed 310
Helix 145	AQ1	f	1272	1305	Right-handed alpha
Helix 146	AQ2	f	1313	1348	Right-handed alpha
Helix 147	AQ3	f	1355	1372	Right-handed alpha
Helix 148	AQ4	f	1374	1380	Right-handed alpha
Helix 149	AQ5	f	1380	1404	Right-handed alpha
Helix 150	AQ6	i	14	32	Right-handed alpha
Helix 151	AQ7	i	34	50	Right-handed alpha
Helix 152	AQ8	k	14	29	Right-handed alpha
Helix 153	AQ9	k	35	58	Right-handed alpha
Helix 154	AR1	v	14	29	Right-handed alpha
Helix 155	AR2	v	38	58	Right-handed alpha

There are 29 sheets in PDB entry 9E28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	95	first strand
Strand 2	B	100	107	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	95	first strand
Strand 2	C	100	108	anti-parallel
Strand 3	C	56	60	parallel
Strand 4	C	131	135	parallel
Strand 5	C	227	231	parallel
Strand 6	C	268	271	parallel
Strand 7	C	309	310	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	245	first strand
Strand 2	D	568	572	anti-parallel
Strand 3	D	558	561	anti-parallel
Strand 4	D	550	552	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	260	first strand
Strand 2	D	270	273	anti-parallel
Strand 3	D	287	288	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	309	314	first strand
Strand 2	D	321	326	anti-parallel
Strand 3	D	331	335	anti-parallel
Strand 4	D	345	346	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	364	first strand
Strand 2	D	371	375	anti-parallel
Strand 3	D	380	385	anti-parallel
Strand 4	D	396	397	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	412	first strand
Strand 2	D	420	423	anti-parallel
Strand 3	D	430	434	anti-parallel
Strand 4	D	442	446	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	470	472	first strand
Strand 2	D	480	484	anti-parallel
Strand 3	D	492	494	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	513	518	first strand
Strand 2	D	522	527	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	24	first strand
Strand 2	E	86	88	anti-parallel
Strand 3	E	79	82	anti-parallel
Strand 4	E	69	70	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	23	first strand
Strand 2	F	87	92	anti-parallel
Strand 3	F	77	80	anti-parallel
Strand 4	F	69	72	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	84	first strand
Strand 2	G	98	99	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	240	244	first strand
Strand 2	H	568	572	anti-parallel
Strand 3	H	558	562	anti-parallel
Strand 4	H	550	552	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	268	272	first strand
Strand 2	H	285	291	anti-parallel
Strand 3	H	303	305	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	309	313	first strand
Strand 2	H	323	326	anti-parallel
Strand 3	H	331	332	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	358	361	first strand
Strand 2	H	374	376	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	399	400	first strand
Strand 2	H	404	405	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	408	412	first strand
Strand 2	H	420	425	anti-parallel
Strand 3	H	433	434	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	480	483	first strand
Strand 2	H	490	494	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	501	506	first strand
Strand 2	H	513	518	anti-parallel
Strand 3	H	522	527	anti-parallel
Strand 4	H	537	540	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	11	13	first strand
Strand 2	d	72	74	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	76	78	first strand
Strand 2	d	81	83	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	722	725	first strand
Strand 2	e	728	733	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	719	723	first strand
Strand 2	f	732	736	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	129	132	first strand
Strand 2	i	66	69	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	120	121	first strand
Strand 2	v	78	79	anti-parallel
Strand 3	k	62	69	anti-parallel
Strand 4	k	105	111	anti-parallel
Strand 5	k	91	95	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	120	121	first strand
Strand 2	v	78	79	anti-parallel
Strand 3	k	62	69	anti-parallel
Strand 4	v	82	83	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	6	7	first strand
Strand 2	i	73	78	anti-parallel
Strand 3	i	81	86	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	79	83	first strand
Strand 2	v	61	71	anti-parallel
Strand 3	v	102	112	anti-parallel
Strand 4	v	91	96	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E28

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E28