Analysis of interatomic Contacts of Structural Units in PDB entry:
9E29

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E29 entry

There are 6 chains in PDB entry 9E29 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 80	GLU 501
B	ASP 80	GLU 501
C	ASP 80	GLU 501
D	ASP 80	GLU 501
E	ASP 80	GLU 501
F	ASP 80	GLU 501

There are 95 helices in PDB entry 9E29. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	80	95	Right-handed alpha
Helix 2	AA2	A	98	105	Right-handed alpha
Helix 3	AA3	A	106	126	Right-handed alpha
Helix 4	AA4	A	130	146	Right-handed alpha
Helix 5	AA5	A	148	150	Right-handed 310
Helix 6	AA6	A	151	157	Right-handed alpha
Helix 7	AA7	A	188	202	Right-handed alpha
Helix 8	AA8	A	249	256	Right-handed alpha
Helix 9	AA9	A	260	273	Right-handed alpha
Helix 10	AB1	A	286	296	Right-handed alpha
Helix 11	AB2	A	337	346	Right-handed alpha
Helix 12	AB3	A	361	372	Right-handed alpha
Helix 13	AB4	A	385	400	Right-handed alpha
Helix 14	AB5	A	405	417	Right-handed alpha
Helix 15	AB6	A	480	487	Right-handed alpha
Helix 16	AB7	A	489	500	Right-handed alpha
Helix 17	AB8	B	81	97	Right-handed alpha
Helix 18	AB9	B	98	105	Right-handed alpha
Helix 19	AC1	B	106	126	Right-handed alpha
Helix 20	AC2	B	130	147	Right-handed alpha
Helix 21	AC3	B	148	150	Right-handed 310
Helix 22	AC4	B	151	157	Right-handed alpha
Helix 23	AC5	B	188	202	Right-handed alpha
Helix 24	AC6	B	249	256	Right-handed alpha
Helix 25	AC7	B	260	273	Right-handed alpha
Helix 26	AC8	B	286	296	Right-handed alpha
Helix 27	AC9	B	337	346	Right-handed alpha
Helix 28	AD1	B	361	372	Right-handed alpha
Helix 29	AD2	B	385	400	Right-handed alpha
Helix 30	AD3	B	405	417	Right-handed alpha
Helix 31	AD4	B	480	488	Right-handed alpha
Helix 32	AD5	B	489	500	Right-handed alpha
Helix 33	AD6	C	81	97	Right-handed alpha
Helix 34	AD7	C	98	105	Right-handed alpha
Helix 35	AD8	C	110	120	Right-handed alpha
Helix 36	AD9	C	130	146	Right-handed alpha
Helix 37	AE1	C	150	157	Right-handed alpha
Helix 38	AE2	C	188	202	Right-handed alpha
Helix 39	AE3	C	249	256	Right-handed alpha
Helix 40	AE4	C	260	273	Right-handed alpha
Helix 41	AE5	C	286	296	Right-handed alpha
Helix 42	AE6	C	337	346	Right-handed alpha
Helix 43	AE7	C	361	372	Right-handed alpha
Helix 44	AE8	C	385	399	Right-handed alpha
Helix 45	AE9	C	405	417	Right-handed alpha
Helix 46	AF1	C	480	487	Right-handed alpha
Helix 47	AF2	C	489	498	Right-handed alpha
Helix 48	AF3	D	81	94	Right-handed alpha
Helix 49	AF4	D	98	103	Right-handed alpha
Helix 50	AF5	D	106	124	Right-handed alpha
Helix 51	AF6	D	130	146	Right-handed alpha
Helix 52	AF7	D	150	157	Right-handed alpha
Helix 53	AF8	D	188	202	Right-handed alpha
Helix 54	AF9	D	249	256	Right-handed alpha
Helix 55	AG1	D	260	273	Right-handed alpha
Helix 56	AG2	D	286	296	Right-handed alpha
Helix 57	AG3	D	337	346	Right-handed alpha
Helix 58	AG4	D	361	368	Right-handed alpha
Helix 59	AG5	D	385	400	Right-handed alpha
Helix 60	AG6	D	405	417	Right-handed alpha
Helix 61	AG7	D	480	487	Right-handed alpha
Helix 62	AG8	D	489	500	Right-handed alpha
Helix 63	AG9	E	81	97	Right-handed alpha
Helix 64	AH1	E	98	105	Right-handed alpha
Helix 65	AH2	E	106	126	Right-handed alpha
Helix 66	AH3	E	130	146	Right-handed alpha
Helix 67	AH4	E	150	157	Right-handed alpha
Helix 68	AH5	E	188	203	Right-handed alpha
Helix 69	AH6	E	249	256	Right-handed alpha
Helix 70	AH7	E	260	272	Right-handed alpha
Helix 71	AH8	E	286	296	Right-handed alpha
Helix 72	AH9	E	337	346	Right-handed alpha
Helix 73	AI1	E	361	372	Right-handed alpha
Helix 74	AI2	E	385	400	Right-handed alpha
Helix 75	AI3	E	405	417	Right-handed alpha
Helix 76	AI4	E	480	488	Right-handed alpha
Helix 77	AI5	E	489	500	Right-handed alpha
Helix 78	AI6	F	81	97	Right-handed alpha
Helix 79	AI7	F	99	104	Right-handed 310
Helix 80	AI8	F	106	115	Right-handed alpha
Helix 81	AI9	F	116	124	Right-handed alpha
Helix 82	AJ1	F	130	146	Right-handed alpha
Helix 83	AJ2	F	148	150	Right-handed 310
Helix 84	AJ3	F	151	157	Right-handed alpha
Helix 85	AJ4	F	188	202	Right-handed alpha
Helix 86	AJ5	F	249	256	Right-handed alpha
Helix 87	AJ6	F	260	273	Right-handed alpha
Helix 88	AJ7	F	286	297	Right-handed alpha
Helix 89	AJ8	F	337	346	Right-handed alpha
Helix 90	AJ9	F	347	349	Right-handed 310
Helix 91	AK1	F	361	371	Right-handed alpha
Helix 92	AK2	F	385	398	Right-handed alpha
Helix 93	AK3	F	405	417	Right-handed alpha
Helix 94	AK4	F	480	488	Right-handed alpha
Helix 95	AK5	F	489	500	Right-handed alpha

There are 14 sheets in PDB entry 9E29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	171	175	anti-parallel
Strand 3	A	162	165	anti-parallel
Strand 4	A	237	241	anti-parallel
Strand 5	A	223	227	anti-parallel
Strand 6	A	213	217	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	324	first strand
Strand 2	A	304	308	parallel
Strand 3	A	352	358	parallel
Strand 4	A	378	382	parallel
Strand 5	A	277	281	parallel
Strand 6	A	419	425	parallel
Strand 7	A	431	443	anti-parallel
Strand 8	A	446	450	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	460	first strand
Strand 2	A	466	472	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	181	first strand
Strand 2	B	171	175	anti-parallel
Strand 3	B	160	166	anti-parallel
Strand 4	B	237	241	anti-parallel
Strand 5	B	223	227	anti-parallel
Strand 6	B	213	214	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	324	first strand
Strand 2	B	304	308	parallel
Strand 3	B	352	355	parallel
Strand 4	B	378	382	parallel
Strand 5	B	277	281	parallel
Strand 6	B	419	425	parallel
Strand 7	B	431	442	anti-parallel
Strand 8	B	447	460	anti-parallel
Strand 9	B	466	472	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	162	165	anti-parallel
Strand 4	C	237	242	anti-parallel
Strand 5	C	222	227	anti-parallel
Strand 6	C	214	218	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	324	first strand
Strand 2	C	304	308	parallel
Strand 3	C	352	355	parallel
Strand 4	C	378	382	parallel
Strand 5	C	277	281	parallel
Strand 6	C	419	425	parallel
Strand 7	C	431	441	anti-parallel
Strand 8	C	448	456	anti-parallel
Strand 9	C	469	472	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	181	first strand
Strand 2	D	172	175	anti-parallel
Strand 3	D	162	164	anti-parallel
Strand 4	D	237	241	anti-parallel
Strand 5	D	223	227	anti-parallel
Strand 6	D	213	217	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	382	first strand
Strand 2	D	277	281	parallel
Strand 3	D	420	425	parallel
Strand 4	D	431	443	anti-parallel
Strand 5	D	446	460	anti-parallel
Strand 6	D	466	472	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	320	324	first strand
Strand 2	D	304	308	parallel
Strand 3	D	352	355	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	181	first strand
Strand 2	E	170	175	anti-parallel
Strand 3	E	160	166	anti-parallel
Strand 4	E	237	241	anti-parallel
Strand 5	E	223	227	anti-parallel
Strand 6	E	213	217	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	320	324	first strand
Strand 2	E	304	308	parallel
Strand 3	E	352	355	parallel
Strand 4	E	378	382	parallel
Strand 5	E	279	281	parallel
Strand 6	E	420	425	parallel
Strand 7	E	431	441	anti-parallel
Strand 8	E	448	460	anti-parallel
Strand 9	E	466	472	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	182	first strand
Strand 2	F	170	175	anti-parallel
Strand 3	F	162	166	anti-parallel
Strand 4	F	237	242	anti-parallel
Strand 5	F	222	227	anti-parallel
Strand 6	F	213	218	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	320	324	first strand
Strand 2	F	304	308	parallel
Strand 3	F	352	355	parallel
Strand 4	F	378	382	parallel
Strand 5	F	277	281	parallel
Strand 6	F	419	425	parallel
Strand 7	F	431	441	anti-parallel
Strand 8	F	448	456	anti-parallel
Strand 9	F	469	472	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E29

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E29