Analysis of interatomic Contacts of Structural Units in PDB entry:
9E2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9E2M entry

There are 6 chains in PDB entry 9E2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 426LEU 723
B
 ASP 26ILE 698
C
 LEU 426THR 709
D
 GLY 427SER 701
E
 GLY 427THR 709
F
 GLY 427THR 709
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 99 helices in PDB entry 9E2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
432 440Right-handed alpha
Helix 2
AA2
A
445 459Right-handed alpha
Helix 3
AA3
A
461 486Right-handed alpha
Helix 4
AA4
A
498 501Right-handed 310
Helix 5
AA5
A
503 523Right-handed alpha
Helix 6
AA6
A
524 527Right-handed 310
Helix 7
AA7
A
528 555Right-handed alpha
Helix 8
AA8
A
559 571Right-handed alpha
Helix 9
AA9
A
572 586Right-handed alpha
Helix 10
AB1
A
593 619Right-handed alpha
Helix 11
AB2
A
637 647Right-handed alpha
Helix 12
AB3
A
650 664Right-handed alpha
Helix 13
AB4
A
667 678Right-handed alpha
Helix 14
AB5
A
685 710Right-handed alpha
Helix 15
AB6
A
717 722Right-handed alpha
Helix 16
AB7
B
30 32Right-handed 310
Helix 17
AB8
B
58 77Right-handed alpha
Helix 18
AB9
B
92 98Right-handed alpha
Helix 19
AC1
B
102 104Right-handed 310
Helix 20
AC2
B
105 123Right-handed alpha
Helix 21
AC3
B
150 167Right-handed alpha
Helix 22
AC4
B
169 190Right-handed alpha
Helix 23
AC5
B
198 210Right-handed alpha
Helix 24
AC6
B
211 224Right-handed alpha
Helix 25
AC7
B
228 265Right-handed alpha
Helix 26
AC8
B
273 279Right-handed alpha
Helix 27
AC9
B
285 308Right-handed alpha
Helix 28
AD1
B
308 315Right-handed alpha
Helix 29
AD2
B
319 331Right-handed alpha
Helix 30
AD3
B
331 341Right-handed alpha
Helix 31
AD4
B
347 349Right-handed 310
Helix 32
AD5
B
350 360Right-handed alpha
Helix 33
AD6
B
433 438Right-handed alpha
Helix 34
AD7
B
446 451Right-handed alpha
Helix 35
AD8
B
461 486Right-handed alpha
Helix 36
AD9
B
498 501Right-handed 310
Helix 37
AE1
B
503 525Right-handed alpha
Helix 38
AE2
B
528 554Right-handed alpha
Helix 39
AE3
B
559 571Right-handed alpha
Helix 40
AE4
B
572 586Right-handed alpha
Helix 41
AE5
B
594 619Right-handed alpha
Helix 42
AE6
B
637 647Right-handed alpha
Helix 43
AE7
B
650 664Right-handed alpha
Helix 44
AE8
B
667 682Right-handed alpha
Helix 45
AE9
B
684 698Right-handed alpha
Helix 46
AF1
C
433 439Right-handed alpha
Helix 47
AF2
C
445 455Right-handed alpha
Helix 48
AF3
C
461 486Right-handed alpha
Helix 49
AF4
C
498 501Right-handed 310
Helix 50
AF5
C
503 522Right-handed alpha
Helix 51
AF6
C
523 527Right-handed 310
Helix 52
AF7
C
528 554Right-handed alpha
Helix 53
AF8
C
559 571Right-handed alpha
Helix 54
AF9
C
571 581Right-handed alpha
Helix 55
AG1
C
594 619Right-handed alpha
Helix 56
AG2
C
637 647Right-handed alpha
Helix 57
AG3
C
650 664Right-handed alpha
Helix 58
AG4
C
667 681Right-handed alpha
Helix 59
AG5
C
682 709Right-handed alpha
Helix 60
AG6
D
432 439Right-handed alpha
Helix 61
AG7
D
445 451Right-handed alpha
Helix 62
AG8
D
461 486Right-handed alpha
Helix 63
AG9
D
498 501Right-handed 310
Helix 64
AH1
D
503 524Right-handed alpha
Helix 65
AH2
D
527 555Right-handed alpha
Helix 66
AH3
D
559 567Right-handed alpha
Helix 67
AH4
D
572 585Right-handed alpha
Helix 68
AH5
D
593 615Right-handed alpha
Helix 69
AH6
D
637 647Right-handed alpha
Helix 70
AH7
D
650 662Right-handed alpha
Helix 71
AH8
D
667 682Right-handed alpha
Helix 72
AH9
D
682 701Right-handed alpha
Helix 73
AI1
E
432 441Right-handed alpha
Helix 74
AI2
E
445 459Right-handed alpha
Helix 75
AI3
E
461 486Right-handed alpha
Helix 76
AI4
E
498 503Right-handed alpha
Helix 77
AI5
E
503 522Right-handed alpha
Helix 78
AI6
E
528 555Right-handed alpha
Helix 79
AI7
E
559 571Right-handed alpha
Helix 80
AI8
E
571 586Right-handed alpha
Helix 81
AI9
E
594 619Right-handed alpha
Helix 82
AJ1
E
637 647Right-handed alpha
Helix 83
AJ2
E
650 664Right-handed alpha
Helix 84
AJ3
E
667 682Right-handed alpha
Helix 85
AJ4
E
682 709Right-handed alpha
Helix 86
AJ5
F
432 441Right-handed alpha
Helix 87
AJ6
F
445 454Right-handed alpha
Helix 88
AJ7
F
454 459Right-handed alpha
Helix 89
AJ8
F
461 486Right-handed alpha
Helix 90
AJ9
F
498 501Right-handed 310
Helix 91
AK1
F
503 524Right-handed alpha
Helix 92
AK2
F
527 555Right-handed alpha
Helix 93
AK3
F
559 571Right-handed alpha
Helix 94
AK4
F
572 586Right-handed alpha
Helix 95
AK5
F
594 619Right-handed alpha
Helix 96
AK6
F
637 647Right-handed alpha
Helix 97
AK7
F
650 664Right-handed alpha
Helix 98
AK8
F
667 679Right-handed alpha
Helix 99
AK9
F
684 708Right-handed alpha
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There are 7 sheets in PDB entry 9E2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 492first strand
Strand 2
A
495 496anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
53 56anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
491 492first strand
Strand 2
B
495 496anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
491 492first strand
Strand 2
C
495 496anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
491 492first strand
Strand 2
D
495 496anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
491 492first strand
Strand 2
E
495 496anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
491 492first strand
Strand 2
F
495 496anti-parallel
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