Analysis of interatomic Contacts of Structural Units in PDB entry:
9E2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9E2P entry

There are 4 chains in PDB entry 9E2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 587
B
 LEU 570ARG 613
C
 MET 1LEU 587
D
 LEU 570ARG 613
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9E2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 27Right-handed alpha
Helix 2
AA2
A
64 74Right-handed alpha
Helix 3
AA3
A
87 96Right-handed alpha
Helix 4
AA4
A
96 105Right-handed alpha
Helix 5
AA5
A
130 138Right-handed alpha
Helix 6
AA6
A
157 168Right-handed alpha
Helix 7
AA7
A
182 197Right-handed alpha
Helix 8
AA8
A
205 217Right-handed alpha
Helix 9
AA9
A
224 237Right-handed alpha
Helix 10
AB1
A
247 262Right-handed alpha
Helix 11
AB2
A
264 274Right-handed alpha
Helix 12
AB3
A
304 317Right-handed alpha
Helix 13
AB4
A
325 333Right-handed alpha
Helix 14
AB5
A
344 349Right-handed alpha
Helix 15
AB6
A
359 373Right-handed alpha
Helix 16
AB7
A
373 385Right-handed alpha
Helix 17
AB8
A
385 390Right-handed alpha
Helix 18
AB9
A
394 397Right-handed 310
Helix 19
AC1
A
404 412Right-handed alpha
Helix 20
AC2
A
430 436Right-handed alpha
Helix 21
AC3
A
442 447Right-handed alpha
Helix 22
AC4
A
502 514Right-handed alpha
Helix 23
AC5
A
541 549Right-handed alpha
Helix 24
AC6
A
568 579Right-handed alpha
Helix 25
AC7
B
584 594Right-handed alpha
Helix 26
AC8
C
16 27Right-handed alpha
Helix 27
AC9
C
64 74Right-handed alpha
Helix 28
AD1
C
87 96Right-handed alpha
Helix 29
AD2
C
96 105Right-handed alpha
Helix 30
AD3
C
130 138Right-handed alpha
Helix 31
AD4
C
157 168Right-handed alpha
Helix 32
AD5
C
182 197Right-handed alpha
Helix 33
AD6
C
205 217Right-handed alpha
Helix 34
AD7
C
224 237Right-handed alpha
Helix 35
AD8
C
247 262Right-handed alpha
Helix 36
AD9
C
264 274Right-handed alpha
Helix 37
AE1
C
304 317Right-handed alpha
Helix 38
AE2
C
325 333Right-handed alpha
Helix 39
AE3
C
344 349Right-handed alpha
Helix 40
AE4
C
359 373Right-handed alpha
Helix 41
AE5
C
373 385Right-handed alpha
Helix 42
AE6
C
385 390Right-handed alpha
Helix 43
AE7
C
394 397Right-handed 310
Helix 44
AE8
C
404 412Right-handed alpha
Helix 45
AE9
C
430 436Right-handed alpha
Helix 46
AF1
C
442 447Right-handed alpha
Helix 47
AF2
C
502 514Right-handed alpha
Helix 48
AF3
C
541 549Right-handed alpha
Helix 49
AF4
C
568 579Right-handed alpha
Helix 50
AF5
D
584 594Right-handed alpha
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There are 9 sheets in PDB entry 9E2P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 146first strand
Strand 2
A
113 118parallel
Strand 3
A
77 83parallel
Strand 4
A
5 11parallel
Strand 5
A
53 56parallel
Strand 6
A
40 42anti-parallel
Strand 7
B
575 577parallel
Strand 8
D
575 577anti-parallel
Strand 9
C
40 42parallel
Strand 10
C
53 56anti-parallel
Strand 11
C
5 11parallel
Strand 12
C
77 83parallel
Strand 13
C
113 118parallel
Strand 14
C
141 146parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
399 401anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
357 358anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 464first strand
Strand 2
A
467 476anti-parallel
Strand 3
A
418 424parallel
Strand 4
A
491 497parallel
Strand 5
A
522 527parallel
Strand 6
A
555 556parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
174 175first strand
Strand 2
C
180 181anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
299 301first strand
Strand 2
C
399 401anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
323 324first strand
Strand 2
C
357 358anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
457 464first strand
Strand 2
C
467 476anti-parallel
Strand 3
C
418 424parallel
Strand 4
C
491 497parallel
Strand 5
C
522 527parallel
Strand 6
C
555 556parallel
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