Analysis of interatomic Contacts of Structural Units in PDB entry:
9E35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9E35 entry

There is 1 chain in PDB entry 9E35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8ALA 622
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9E35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 34Right-handed alpha
Helix 2
AA2
A
44 58Right-handed alpha
Helix 3
AA3
A
85 87Right-handed 310
Helix 4
AA4
A
95 99Right-handed 310
Helix 5
AA5
A
107 120Right-handed alpha
Helix 6
AA6
A
152 163Right-handed alpha
Helix 7
AA7
A
167 174Right-handed alpha
Helix 8
AA8
A
223 228Right-handed alpha
Helix 9
AA9
A
236 247Right-handed alpha
Helix 10
AB1
A
277 283Right-handed alpha
Helix 11
AB2
A
334 341Right-handed alpha
Helix 12
AB3
A
362 371Right-handed 310
Helix 13
AB4
A
385 393Right-handed alpha
Helix 14
AB5
A
408 410Right-handed 310
Helix 15
AB6
A
446 456Right-handed alpha
Helix 16
AB7
A
476 479Right-handed 310
Helix 17
AB8
A
486 504Right-handed alpha
Helix 18
AB9
A
529 532Right-handed 310
Helix 19
AC1
A
533 545Right-handed alpha
Helix 20
AC2
A
560 564Right-handed 310
Helix 21
AC3
A
572 581Right-handed alpha
Helix 22
AC4
A
583 601Right-handed alpha
Helix 23
AC5
A
606 621Right-handed alpha
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There are 8 sheets in PDB entry 9E35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
127 135parallel
Strand 3
A
144 150anti-parallel
Strand 4
A
180 185parallel
Strand 5
A
215 219parallel
Strand 6
A
206 210anti-parallel
Strand 7
A
89 91parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
127 135parallel
Strand 3
A
164 165anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
73 75anti-parallel
Strand 3
A
346 348parallel
Strand 4
A
402 406anti-parallel
Strand 5
A
321 325anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
303 307anti-parallel
Strand 3
A
313 316anti-parallel
Strand 4
A
423 424anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 299first strand
Strand 2
A
254 259anti-parallel
Strand 3
A
265 271anti-parallel
Strand 4
A
427 430parallel
Strand 5
A
510 514parallel
Strand 6
A
441 443anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 359first strand
Strand 2
A
351 353anti-parallel
Strand 3
A
376 377anti-parallel
Strand 4
A
383 384anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 460first strand
Strand 2
A
472 474anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 553first strand
Strand 2
A
556 558anti-parallel
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