Analysis of interatomic Contacts of Structural Units in PDB entry:
9E41

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E41 entry

There are 6 chains in PDB entry 9E41 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 1	GLY 494
B	SER 1	ALA 75
E	THR 1	GLY 494
F	SER 1	ALA 75
C	THR 1	GLY 494
D	SER 1	ALA 75

There are 44 helices in PDB entry 9E41. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	87	Right-handed 310
Helix 2	AA2	A	193	195	Right-handed 310
Helix 3	AA3	A	217	221	Right-handed alpha
Helix 4	AA4	A	260	267	Right-handed alpha
Helix 5	AA5	A	308	310	Right-handed 310
Helix 6	AA6	A	398	417	Right-handed alpha
Helix 7	AA7	A	418	424	Right-handed 310
Helix 8	AA8	A	429	451	Right-handed alpha
Helix 9	AA9	A	454	471	Right-handed alpha
Helix 10	AB1	A	474	494	Right-handed alpha
Helix 11	AB2	B	22	39	Right-handed alpha
Helix 12	AB3	B	40	54	Right-handed alpha
Helix 13	AB4	B	56	74	Right-handed alpha
Helix 14	AB5	E	1	6	Right-handed 310
Helix 15	AB6	E	82	87	Right-handed 310
Helix 16	AB7	E	177	179	Right-handed 310
Helix 17	AB8	E	204	208	Right-handed 310
Helix 18	AB9	E	216	221	Right-handed alpha
Helix 19	AC1	E	237	240	Right-handed 310
Helix 20	AC2	E	260	268	Right-handed alpha
Helix 21	AC3	E	398	417	Right-handed alpha
Helix 22	AC4	E	418	424	Right-handed 310
Helix 23	AC5	E	430	451	Right-handed alpha
Helix 24	AC6	E	454	472	Right-handed alpha
Helix 25	AC7	E	474	492	Right-handed alpha
Helix 26	AC8	F	22	39	Right-handed alpha
Helix 27	AC9	F	39	54	Right-handed alpha
Helix 28	AD1	F	56	70	Right-handed alpha
Helix 29	AD2	C	1	6	Right-handed 310
Helix 30	AD3	C	100	104	Right-handed 310
Helix 31	AD4	C	188	191	Right-handed 310
Helix 32	AD5	C	217	222	Right-handed alpha
Helix 33	AD6	C	237	240	Right-handed 310
Helix 34	AD7	C	260	267	Right-handed alpha
Helix 35	AD8	C	308	310	Right-handed 310
Helix 36	AD9	C	398	417	Right-handed alpha
Helix 37	AE1	C	418	424	Right-handed 310
Helix 38	AE2	C	429	451	Right-handed alpha
Helix 39	AE3	C	454	472	Right-handed alpha
Helix 40	AE4	C	474	493	Right-handed alpha
Helix 41	AE5	D	22	39	Right-handed alpha
Helix 42	AE6	D	39	54	Right-handed alpha
Helix 43	AE7	D	56	71	Right-handed alpha
Helix 44	AE8	D	72	75	Right-handed 310

There are 28 sheets in PDB entry 9E41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	14	first strand
Strand 2	A	30	35	parallel
Strand 3	A	41	51	anti-parallel
Strand 4	A	280	283	anti-parallel
Strand 5	A	273	277	anti-parallel
Strand 6	A	212	216	anti-parallel
Strand 7	A	197	202	anti-parallel
Strand 8	A	126	130	anti-parallel
Strand 9	A	55	60	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	14	first strand
Strand 2	A	30	35	parallel
Strand 3	A	41	51	anti-parallel
Strand 4	A	138	145	anti-parallel
Strand 5	A	161	165	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	26	first strand
Strand 2	A	287	292	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	73	first strand
Strand 2	A	112	121	anti-parallel
Strand 3	A	90	95	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	109	110	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	181	183	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	254	256	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	320	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	372	376	anti-parallel
Strand 4	A	357	358	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	364	366	anti-parallel
Strand 3	A	369	370	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	347	first strand
Strand 2	A	380	386	anti-parallel
Strand 3	A	392	395	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	31	35	parallel
Strand 3	E	41	49	anti-parallel
Strand 4	E	138	145	anti-parallel
Strand 5	E	161	165	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	26	first strand
Strand 2	E	287	293	anti-parallel
Strand 3	E	181	187	anti-parallel
Strand 4	E	172	175	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	127	131	anti-parallel
Strand 3	E	198	202	anti-parallel
Strand 4	E	212	215	anti-parallel
Strand 5	E	273	277	anti-parallel
Strand 6	E	280	283	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	59	first strand
Strand 2	E	227	228	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	73	first strand
Strand 2	E	112	118	anti-parallel
Strand 3	E	90	95	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	99	first strand
Strand 2	E	109	110	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	242	244	first strand
Strand 2	E	254	256	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	305	306	first strand
Strand 2	E	339	340	parallel
Strand 3	E	364	365	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	314	320	first strand
Strand 2	E	326	330	anti-parallel
Strand 3	E	372	375	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	343	347	first strand
Strand 2	E	380	386	anti-parallel
Strand 3	E	391	395	anti-parallel

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There are 10 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	34	parallel
Strand 3	C	41	51	anti-parallel
Strand 4	C	280	283	anti-parallel
Strand 5	C	271	275	anti-parallel
Strand 6	C	212	216	anti-parallel
Strand 7	C	197	202	anti-parallel
Strand 8	C	126	131	anti-parallel
Strand 9	C	54	60	anti-parallel
Strand 10	C	227	228	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	165	first strand
Strand 2	C	138	145	anti-parallel
Strand 3	C	41	51	anti-parallel
Strand 4	C	280	283	anti-parallel
Strand 5	C	271	275	anti-parallel
Strand 6	D	18	19	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	287	293	anti-parallel
Strand 3	C	181	186	anti-parallel
Strand 4	C	171	175	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	72	first strand
Strand 2	C	109	121	anti-parallel
Strand 3	C	90	99	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	244	first strand
Strand 2	C	254	256	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	320	first strand
Strand 2	C	326	332	anti-parallel
Strand 3	C	373	376	anti-parallel
Strand 4	C	357	358	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	364	365	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	347	first strand
Strand 2	C	380	386	anti-parallel
Strand 3	C	389	395	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E41

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E41