Analysis of interatomic Contacts of Structural Units in PDB entry:
9E4J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E4J entry

There are 9 chains in PDB entry 9E4J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 40	ALA 457
B	SER 40	GLU 452
C	SER 40	GLU 452
D	ILE 2	GLY 60
E	ASN 1	CYS 118
F	ILE 2	GLY 60
G	ASN 1	CYS 118
H	ILE 2	GLY 60
I	ASN 1	CYS 118

There are 80 helices in PDB entry 9E4J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	70	Right-handed alpha
Helix 2	AA2	A	104	112	Right-handed alpha
Helix 3	AA3	A	126	130	Right-handed 310
Helix 4	AA4	A	131	142	Right-handed alpha
Helix 5	AA5	A	153	162	Right-handed alpha
Helix 6	AA6	A	164	168	Right-handed alpha
Helix 7	AA7	A	180	182	Right-handed 310
Helix 8	AA8	A	199	203	Right-handed 310
Helix 9	AA9	A	225	229	Right-handed 310
Helix 10	AB1	A	257	262	Right-handed alpha
Helix 11	AB2	A	306	324	Right-handed alpha
Helix 12	AB3	A	338	345	Right-handed alpha
Helix 13	AB4	A	345	356	Right-handed alpha
Helix 14	AB5	A	386	394	Right-handed alpha
Helix 15	AB6	A	397	404	Right-handed alpha
Helix 16	AB7	A	427	451	Right-handed alpha
Helix 17	AB8	B	41	70	Right-handed alpha
Helix 18	AB9	B	104	112	Right-handed alpha
Helix 19	AC1	B	126	130	Right-handed 310
Helix 20	AC2	B	131	142	Right-handed alpha
Helix 21	AC3	B	153	162	Right-handed alpha
Helix 22	AC4	B	164	168	Right-handed alpha
Helix 23	AC5	B	180	182	Right-handed 310
Helix 24	AC6	B	199	203	Right-handed 310
Helix 25	AC7	B	213	216	Right-handed 310
Helix 26	AC8	B	225	229	Right-handed 310
Helix 27	AC9	B	257	262	Right-handed alpha
Helix 28	AD1	B	295	299	Right-handed 310
Helix 29	AD2	B	306	324	Right-handed alpha
Helix 30	AD3	B	338	345	Right-handed alpha
Helix 31	AD4	B	345	356	Right-handed alpha
Helix 32	AD5	B	386	394	Right-handed alpha
Helix 33	AD6	B	397	404	Right-handed alpha
Helix 34	AD7	B	427	450	Right-handed alpha
Helix 35	AD8	C	40	42	Right-handed 310
Helix 36	AD9	C	43	69	Right-handed alpha
Helix 37	AE1	C	104	112	Right-handed alpha
Helix 38	AE2	C	126	130	Right-handed 310
Helix 39	AE3	C	131	142	Right-handed alpha
Helix 40	AE4	C	153	162	Right-handed alpha
Helix 41	AE5	C	164	168	Right-handed alpha
Helix 42	AE6	C	180	182	Right-handed 310
Helix 43	AE7	C	199	203	Right-handed 310
Helix 44	AE8	C	213	216	Right-handed 310
Helix 45	AE9	C	225	229	Right-handed 310
Helix 46	AF1	C	257	262	Right-handed alpha
Helix 47	AF2	C	294	298	Right-handed 310
Helix 48	AF3	C	306	324	Right-handed alpha
Helix 49	AF4	C	338	345	Right-handed alpha
Helix 50	AF5	C	345	355	Right-handed alpha
Helix 51	AF6	C	386	394	Right-handed alpha
Helix 52	AF7	C	397	404	Right-handed alpha
Helix 53	AF8	C	427	451	Right-handed alpha
Helix 54	AF9	D	4	9	Right-handed 310
Helix 55	AG1	D	50	58	Right-handed alpha
Helix 56	AG2	E	2	13	Right-handed alpha
Helix 57	AG3	E	16	20	Right-handed 310
Helix 58	AG4	E	37	56	Right-handed alpha
Helix 59	AG5	E	73	77	Right-handed 310
Helix 60	AG6	E	84	104	Right-handed alpha
Helix 61	AG7	E	107	111	Right-handed 310
Helix 62	AG8	E	114	118	Right-handed 310
Helix 63	AG9	F	4	9	Right-handed 310
Helix 64	AH1	F	50	59	Right-handed alpha
Helix 65	AH2	G	2	13	Right-handed alpha
Helix 66	AH3	G	16	20	Right-handed 310
Helix 67	AH4	G	37	56	Right-handed alpha
Helix 68	AH5	G	73	77	Right-handed 310
Helix 69	AH6	G	84	104	Right-handed alpha
Helix 70	AH7	G	107	111	Right-handed 310
Helix 71	AH8	G	114	118	Right-handed 310
Helix 72	AH9	H	4	9	Right-handed 310
Helix 73	AI1	H	50	59	Right-handed alpha
Helix 74	AI2	I	2	13	Right-handed alpha
Helix 75	AI3	I	16	20	Right-handed 310
Helix 76	AI4	I	37	56	Right-handed alpha
Helix 77	AI5	I	73	77	Right-handed 310
Helix 78	AI6	I	84	104	Right-handed alpha
Helix 79	AI7	I	107	111	Right-handed 310
Helix 80	AI8	I	114	118	Right-handed 310

There are 15 sheets in PDB entry 9E4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	80	first strand
Strand 2	A	417	424	anti-parallel
Strand 3	A	269	281	parallel
Strand 4	A	405	412	parallel
Strand 5	A	218	223	anti-parallel
Strand 6	A	169	174	anti-parallel
Strand 7	A	177	178	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	80	first strand
Strand 2	A	417	424	anti-parallel
Strand 3	A	269	281	parallel
Strand 4	A	368	380	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	208	209	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	189	first strand
Strand 2	A	192	197	anti-parallel
Strand 3	A	89	94	anti-parallel
Strand 4	A	245	250	anti-parallel
Strand 5	A	263	265	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	80	first strand
Strand 2	B	417	424	anti-parallel
Strand 3	B	269	281	parallel
Strand 4	B	405	412	parallel
Strand 5	B	218	223	anti-parallel
Strand 6	B	169	174	anti-parallel
Strand 7	B	177	178	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	80	first strand
Strand 2	B	417	424	anti-parallel
Strand 3	B	269	281	parallel
Strand 4	B	368	380	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	208	209	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	189	first strand
Strand 2	B	192	197	anti-parallel
Strand 3	B	89	94	anti-parallel
Strand 4	B	245	250	anti-parallel
Strand 5	B	263	265	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	80	first strand
Strand 2	C	417	424	anti-parallel
Strand 3	C	269	281	parallel
Strand 4	C	405	412	parallel
Strand 5	C	218	223	anti-parallel
Strand 6	C	169	174	anti-parallel
Strand 7	C	177	178	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	80	first strand
Strand 2	C	417	424	anti-parallel
Strand 3	C	269	281	parallel
Strand 4	C	368	380	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	C	208	209	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	189	first strand
Strand 2	C	192	197	anti-parallel
Strand 3	C	89	94	anti-parallel
Strand 4	C	245	250	anti-parallel
Strand 5	C	263	265	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	27	first strand
Strand 2	D	32	38	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	27	first strand
Strand 2	F	32	38	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	27	first strand
Strand 2	H	32	38	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E4J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E4J