Analysis of interatomic Contacts of Structural Units in PDB entry:
9E5A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9E5A entry

There are 2 chains in PDB entry 9E5A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 53TYR 311
B
 SER 53TYR 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 9E5A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 65Right-handed alpha
Helix 2
AA2
A
69 85Right-handed alpha
Helix 3
AA3
A
87 105Right-handed alpha
Helix 4
AA4
A
108 120Right-handed alpha
Helix 5
AA5
A
137 155Right-handed alpha
Helix 6
AA6
A
155 164Right-handed alpha
Helix 7
AA7
A
169 196Right-handed alpha
Helix 8
AA8
A
205 231Right-handed alpha
Helix 9
AA9
A
232 236Right-handed 310
Helix 10
AB1
A
241 273Right-handed alpha
Helix 11
AB2
A
281 293Right-handed alpha
Helix 12
AB3
A
294 297Right-handed 310
Helix 13
AB4
A
299 307Right-handed alpha
Helix 14
AB5
B
54 65Right-handed alpha
Helix 15
AB6
B
69 85Right-handed alpha
Helix 16
AB7
B
87 104Right-handed alpha
Helix 17
AB8
B
111 120Right-handed alpha
Helix 18
AB9
B
137 154Right-handed alpha
Helix 19
AC1
B
155 164Right-handed alpha
Helix 20
AC2
B
169 195Right-handed alpha
Helix 21
AC3
B
205 231Right-handed alpha
Helix 22
AC4
B
241 273Right-handed alpha
Helix 23
AC5
B
281 293Right-handed alpha
Helix 24
AC6
B
294 297Right-handed 310
Helix 25
AC7
B
299 308Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 9E5A.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
132 133anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il