Analysis of interatomic Contacts of Structural Units in PDB entry:
9E5Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E5Y entry

There are 7 chains in PDB entry 9E5Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 898
B	MET 1	PHE 228
C	MET 1	GLY 898
D	MET 1	PHE 228
E	MET 1	PHE 228
P	A 5	C 25
T	G 3	T 34

There are 82 helices in PDB entry 9E5Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	74	Right-handed alpha
Helix 2	AA2	A	85	96	Right-handed alpha
Helix 3	AA3	A	102	106	Right-handed 310
Helix 4	AA4	A	160	165	Right-handed alpha
Helix 5	AA5	A	176	181	Right-handed alpha
Helix 6	AA6	A	191	205	Right-handed alpha
Helix 7	AA7	A	218	231	Right-handed alpha
Helix 8	AA8	A	232	237	Right-handed alpha
Helix 9	AA9	A	238	240	Right-handed 310
Helix 10	AB1	A	269	278	Right-handed alpha
Helix 11	AB2	A	286	295	Right-handed alpha
Helix 12	AB3	A	306	312	Right-handed alpha
Helix 13	AB4	A	313	336	Right-handed alpha
Helix 14	AB5	A	336	346	Right-handed alpha
Helix 15	AB6	A	351	356	Right-handed 310
Helix 16	AB7	A	357	371	Right-handed alpha
Helix 17	AB8	A	411	421	Right-handed alpha
Helix 18	AB9	A	435	441	Right-handed alpha
Helix 19	AC1	A	466	501	Right-handed alpha
Helix 20	AC2	A	520	527	Right-handed alpha
Helix 21	AC3	A	532	568	Right-handed alpha
Helix 22	AC4	A	576	581	Right-handed alpha
Helix 23	AC5	A	584	607	Right-handed alpha
Helix 24	AC6	A	626	634	Right-handed alpha
Helix 25	AC7	A	640	655	Right-handed alpha
Helix 26	AC8	A	655	671	Right-handed alpha
Helix 27	AC9	A	735	751	Right-handed alpha
Helix 28	AD1	A	753	769	Right-handed alpha
Helix 29	AD2	A	772	777	Right-handed alpha
Helix 30	AD3	A	784	789	Right-handed 310
Helix 31	AD4	A	799	812	Right-handed alpha
Helix 32	AD5	A	851	853	Right-handed 310
Helix 33	AD6	A	854	861	Right-handed alpha
Helix 34	AD7	A	866	870	Right-handed 310
Helix 35	AD8	A	872	883	Right-handed alpha
Helix 36	AD9	A	893	898	Right-handed alpha
Helix 37	AE1	B	4	18	Right-handed alpha
Helix 38	AE2	B	57	67	Right-handed alpha
Helix 39	AE3	B	96	100	Right-handed 310
Helix 40	AE4	B	119	133	Right-handed alpha
Helix 41	AE5	B	185	187	Right-handed 310
Helix 42	AE6	C	62	75	Right-handed alpha
Helix 43	AE7	C	85	96	Right-handed alpha
Helix 44	AE8	C	102	106	Right-handed 310
Helix 45	AE9	C	160	166	Right-handed alpha
Helix 46	AF1	C	176	182	Right-handed alpha
Helix 47	AF2	C	190	205	Right-handed alpha
Helix 48	AF3	C	214	219	Right-handed alpha
Helix 49	AF4	C	219	231	Right-handed alpha
Helix 50	AF5	C	231	237	Right-handed alpha
Helix 51	AF6	C	238	240	Right-handed 310
Helix 52	AF7	C	269	278	Right-handed alpha
Helix 53	AF8	C	286	296	Right-handed alpha
Helix 54	AF9	C	305	307	Right-handed 310
Helix 55	AG1	C	308	313	Right-handed alpha
Helix 56	AG2	C	313	336	Right-handed alpha
Helix 57	AG3	C	337	349	Right-handed alpha
Helix 58	AG4	C	351	356	Right-handed 310
Helix 59	AG5	C	357	373	Right-handed alpha
Helix 60	AG6	C	411	421	Right-handed alpha
Helix 61	AG7	C	435	441	Right-handed alpha
Helix 62	AG8	C	467	503	Right-handed alpha
Helix 63	AG9	C	520	529	Right-handed alpha
Helix 64	AH1	C	531	562	Right-handed alpha
Helix 65	AH2	C	563	568	Right-handed alpha
Helix 66	AH3	C	576	607	Right-handed alpha
Helix 67	AH4	C	627	634	Right-handed alpha
Helix 68	AH5	C	635	638	Right-handed 310
Helix 69	AH6	C	640	672	Right-handed alpha
Helix 70	AH7	C	735	751	Right-handed alpha
Helix 71	AH8	C	753	771	Right-handed alpha
Helix 72	AH9	C	799	812	Right-handed alpha
Helix 73	AI1	C	851	862	Right-handed alpha
Helix 74	AI2	C	863	872	Right-handed alpha
Helix 75	AI3	C	872	882	Right-handed alpha
Helix 76	AI4	C	893	898	Right-handed alpha
Helix 77	AI5	D	4	18	Right-handed alpha
Helix 78	AI6	D	56	66	Right-handed alpha
Helix 79	AI7	D	119	133	Right-handed alpha
Helix 80	AI8	E	4	18	Right-handed alpha
Helix 81	AI9	E	56	67	Right-handed alpha
Helix 82	AJ1	E	119	134	Right-handed alpha

There are 30 sheets in PDB entry 9E5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	11	first strand
Strand 2	A	14	20	anti-parallel
Strand 3	A	26	31	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	55	59	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	375	376	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	108	110	anti-parallel
Strand 3	A	209	211	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	129	130	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	154	155	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	252	first strand
Strand 2	A	255	257	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	614	617	first strand
Strand 2	A	621	625	anti-parallel
Strand 3	A	404	409	anti-parallel
Strand 4	A	680	686	anti-parallel
Strand 5	A	704	712	anti-parallel
Strand 6	A	698	701	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	614	617	first strand
Strand 2	A	621	625	anti-parallel
Strand 3	A	404	409	anti-parallel
Strand 4	A	680	686	anti-parallel
Strand 5	A	704	712	anti-parallel
Strand 6	A	716	724	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	453	first strand
Strand 2	A	459	460	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	781	first strand
Strand 2	A	825	830	anti-parallel
Strand 3	A	841	845	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	22	first strand
Strand 2	B	53	54	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	38	42	anti-parallel
Strand 3	B	214	219	anti-parallel
Strand 4	B	204	211	anti-parallel
Strand 5	B	194	201	anti-parallel
Strand 6	B	114	118	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	81	84	anti-parallel
Strand 3	B	89	92	anti-parallel
Strand 4	E	165	171	anti-parallel
Strand 5	E	146	152	anti-parallel
Strand 6	E	137	143	anti-parallel
Strand 7	E	177	183	anti-parallel
Strand 8	E	225	227	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	137	143	anti-parallel
Strand 3	B	146	152	anti-parallel
Strand 4	B	165	171	anti-parallel
Strand 5	D	88	92	anti-parallel
Strand 6	D	81	84	anti-parallel
Strand 7	D	72	75	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	11	first strand
Strand 2	C	14	20	anti-parallel
Strand 3	C	26	32	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	40	first strand
Strand 2	C	54	59	anti-parallel
Strand 3	C	47	48	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	188	first strand
Strand 2	C	142	148	parallel
Strand 3	C	135	137	anti-parallel
Strand 4	C	108	111	anti-parallel
Strand 5	C	209	211	parallel
Strand 6	C	266	267	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	116	first strand
Strand 2	C	129	132	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	248	first strand
Strand 2	C	259	260	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	614	615	first strand
Strand 2	C	621	624	anti-parallel
Strand 3	C	404	409	anti-parallel
Strand 4	C	680	686	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	430	first strand
Strand 2	C	458	460	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	699	701	first strand
Strand 2	C	704	705	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	712	first strand
Strand 2	C	715	722	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	778	780	first strand
Strand 2	C	826	830	anti-parallel
Strand 3	C	841	845	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	22	first strand
Strand 2	D	53	54	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	32	first strand
Strand 2	D	38	48	anti-parallel
Strand 3	D	214	219	anti-parallel
Strand 4	D	204	210	anti-parallel
Strand 5	D	194	201	anti-parallel
Strand 6	D	114	118	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	227	first strand
Strand 2	D	177	183	anti-parallel
Strand 3	D	137	143	anti-parallel
Strand 4	D	146	152	anti-parallel
Strand 5	D	165	171	anti-parallel
Strand 6	E	88	92	anti-parallel
Strand 7	E	81	84	anti-parallel
Strand 8	E	72	75	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	23	first strand
Strand 2	E	52	54	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	32	first strand
Strand 2	E	38	48	anti-parallel
Strand 3	E	214	218	anti-parallel
Strand 4	E	204	210	anti-parallel
Strand 5	E	194	201	anti-parallel
Strand 6	E	114	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E5Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E5Y