Analysis of interatomic Contacts of Structural Units in PDB entry:
9E5Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E5Z entry

There are 8 chains in PDB entry 9E5Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 37	PRO 469
B	VAL 236	ALA 443
C	SER 3	LYS 406
D	GLU 100	GLN 406
E	SER 24	ILE 333
F	SER 38	GLN 316
G	ASN 10	ALA 222
H	PHE 11	ASN 183

There are125 helices in PDB entry 9E5Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	51	Right-handed alpha
Helix 2	AA2	A	53	66	Right-handed alpha
Helix 3	AA3	A	69	80	Right-handed alpha
Helix 4	AA4	A	88	90	Right-handed 310
Helix 5	AA5	A	91	96	Right-handed alpha
Helix 6	AA6	A	97	102	Right-handed 310
Helix 7	AA7	A	128	155	Right-handed alpha
Helix 8	AA8	A	157	160	Right-handed 310
Helix 9	AA9	A	161	175	Right-handed alpha
Helix 10	AB1	A	178	181	Right-handed 310
Helix 11	AB2	A	182	191	Right-handed alpha
Helix 12	AB3	A	194	211	Right-handed alpha
Helix 13	AB4	A	214	228	Right-handed alpha
Helix 14	AB5	A	244	260	Right-handed alpha
Helix 15	AB6	A	262	271	Right-handed alpha
Helix 16	AB7	A	285	301	Right-handed alpha
Helix 17	AB8	A	302	310	Right-handed alpha
Helix 18	AB9	A	313	322	Right-handed alpha
Helix 19	AC1	A	323	335	Right-handed alpha
Helix 20	AC2	A	337	348	Right-handed alpha
Helix 21	AC3	A	348	353	Right-handed alpha
Helix 22	AC4	A	358	378	Right-handed alpha
Helix 23	AC5	A	386	392	Right-handed alpha
Helix 24	AC6	A	396	410	Right-handed alpha
Helix 25	AC7	A	430	463	Right-handed alpha
Helix 26	AC8	B	239	241	Right-handed 310
Helix 27	AC9	B	242	247	Right-handed alpha
Helix 28	AD1	B	251	265	Right-handed alpha
Helix 29	AD2	B	269	287	Right-handed alpha
Helix 30	AD3	B	292	296	Right-handed 310
Helix 31	AD4	B	309	321	Right-handed alpha
Helix 32	AD5	B	322	333	Right-handed alpha
Helix 33	AD6	B	343	351	Right-handed alpha
Helix 34	AD7	B	352	363	Right-handed alpha
Helix 35	AD8	B	371	378	Right-handed alpha
Helix 36	AD9	B	381	395	Right-handed alpha
Helix 37	AE1	B	419	440	Right-handed alpha
Helix 38	AE2	C	4	16	Right-handed alpha
Helix 39	AE3	C	20	29	Right-handed alpha
Helix 40	AE4	C	38	40	Right-handed 310
Helix 41	AE5	C	41	47	Right-handed alpha
Helix 42	AE6	C	53	64	Right-handed alpha
Helix 43	AE7	C	70	72	Right-handed 310
Helix 44	AE8	C	73	88	Right-handed alpha
Helix 45	AE9	C	90	95	Right-handed 310
Helix 46	AF1	C	98	115	Right-handed alpha
Helix 47	AF2	C	118	124	Right-handed alpha
Helix 48	AF3	C	125	130	Right-handed alpha
Helix 49	AF4	C	141	152	Right-handed alpha
Helix 50	AF5	C	158	162	Right-handed 310
Helix 51	AF6	C	177	195	Right-handed alpha
Helix 52	AF7	C	197	210	Right-handed alpha
Helix 53	AF8	C	220	223	Right-handed 310
Helix 54	AF9	C	224	235	Right-handed alpha
Helix 55	AG1	C	252	257	Right-handed alpha
Helix 56	AG2	C	258	267	Right-handed alpha
Helix 57	AG3	C	271	282	Right-handed alpha
Helix 58	AG4	C	282	289	Right-handed alpha
Helix 59	AG5	C	295	310	Right-handed alpha
Helix 60	AG6	C	319	323	Right-handed alpha
Helix 61	AG7	C	330	344	Right-handed alpha
Helix 62	AG8	C	371	399	Right-handed alpha
Helix 63	AG9	C	400	405	Right-handed 310
Helix 64	AH1	D	101	116	Right-handed alpha
Helix 65	AH2	D	120	124	Right-handed 310
Helix 66	AH3	D	125	130	Right-handed alpha
Helix 67	AH4	D	140	158	Right-handed alpha
Helix 68	AH5	D	160	176	Right-handed alpha
Helix 69	AH6	D	181	198	Right-handed alpha
Helix 70	AH7	D	200	212	Right-handed alpha
Helix 71	AH8	D	218	236	Right-handed alpha
Helix 72	AH9	D	239	252	Right-handed alpha
Helix 73	AI1	D	253	258	Right-handed 310
Helix 74	AI2	D	260	269	Right-handed alpha
Helix 75	AI3	D	274	285	Right-handed alpha
Helix 76	AI4	D	286	290	Right-handed 310
Helix 77	AI5	D	298	312	Right-handed alpha
Helix 78	AI6	D	321	329	Right-handed alpha
Helix 79	AI7	D	331	345	Right-handed alpha
Helix 80	AI8	D	365	392	Right-handed alpha
Helix 81	AI9	D	392	401	Right-handed alpha
Helix 82	AJ1	E	24	30	Right-handed 310
Helix 83	AJ2	E	32	43	Right-handed alpha
Helix 84	AJ3	E	44	47	Right-handed 310
Helix 85	AJ4	E	59	72	Right-handed alpha
Helix 86	AJ5	E	109	112	Right-handed 310
Helix 87	AJ6	E	113	125	Right-handed alpha
Helix 88	AJ7	E	126	128	Right-handed 310
Helix 89	AJ8	E	148	162	Right-handed alpha
Helix 90	AJ9	E	171	179	Right-handed alpha
Helix 91	AK1	E	207	209	Right-handed 310
Helix 92	AK2	E	210	217	Right-handed alpha
Helix 93	AK3	E	231	242	Right-handed alpha
Helix 94	AK4	E	260	281	Right-handed alpha
Helix 95	AK5	E	298	329	Right-handed alpha
Helix 96	AK6	F	44	61	Right-handed alpha
Helix 97	AK7	F	101	116	Right-handed alpha
Helix 98	AK8	F	132	144	Right-handed alpha
Helix 99	AK9	F	193	206	Right-handed alpha
Helix 100	AL1	F	216	221	Right-handed alpha
Helix 101	AL2	F	224	248	Right-handed alpha
Helix 102	AL3	F	253	266	Right-handed alpha
Helix 103	AL4	F	274	313	Right-handed alpha
Helix 104	AL5	G	11	19	Right-handed alpha
Helix 105	AL6	G	24	37	Right-handed alpha
Helix 106	AL7	G	49	54	Right-handed alpha
Helix 107	AL8	G	55	57	Right-handed 310
Helix 108	AL9	G	60	73	Right-handed alpha
Helix 109	AM1	G	74	80	Right-handed 310
Helix 110	AM2	G	89	108	Right-handed alpha
Helix 111	AM3	G	113	121	Right-handed alpha
Helix 112	AM4	G	124	138	Right-handed alpha
Helix 113	AM5	G	166	220	Right-handed alpha
Helix 114	AM6	H	12	26	Right-handed alpha
Helix 115	AM7	H	33	47	Right-handed alpha
Helix 116	AM8	H	49	60	Right-handed alpha
Helix 117	AM9	H	63	68	Right-handed alpha
Helix 118	AN1	H	69	75	Right-handed alpha
Helix 119	AN2	H	77	83	Right-handed alpha
Helix 120	AN3	H	85	94	Right-handed alpha
Helix 121	AN4	H	104	121	Right-handed alpha
Helix 122	AN5	H	130	138	Right-handed alpha
Helix 123	AN6	H	140	149	Right-handed alpha
Helix 124	AN7	H	150	152	Right-handed 310
Helix 125	AN8	H	169	182	Right-handed alpha

There are 5 sheets in PDB entry 9E5Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	110	112	first strand
Strand 2	G	151	157	anti-parallel
Strand 3	G	141	146	anti-parallel
Strand 4	D	316	320	parallel
Strand 5	D	358	360	anti-parallel
Strand 6	D	351	353	anti-parallel
Strand 7	B	366	370	parallel
Strand 8	B	408	411	anti-parallel
Strand 9	B	400	403	anti-parallel
Strand 10	A	381	385	parallel
Strand 11	A	423	426	anti-parallel
Strand 12	A	415	418	anti-parallel
Strand 13	C	314	318	parallel
Strand 14	C	357	360	anti-parallel
Strand 15	C	349	352	anti-parallel
Strand 16	H	125	129	parallel
Strand 17	H	161	162	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	168	169	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	221	223	first strand
Strand 2	E	183	188	anti-parallel
Strand 3	E	167	170	anti-parallel
Strand 4	E	132	139	parallel
Strand 5	E	78	86	anti-parallel
Strand 6	E	89	97	anti-parallel
Strand 7	E	54	58	parallel
Strand 8	E	225	229	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	186	first strand
Strand 2	F	165	175	anti-parallel
Strand 3	F	150	154	anti-parallel
Strand 4	F	120	127	parallel
Strand 5	F	70	77	anti-parallel
Strand 6	F	80	88	anti-parallel
Strand 7	F	40	43	parallel
Strand 8	F	188	190	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	97	100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E5Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E5Z