Analysis of interatomic Contacts of Structural Units in PDB entry:
9E6A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E6A entry

There are 4 chains in PDB entry 9E6A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 6	VAL 254
B	HIS 7	ASP 256
C	PRO 4	LEU 255
D	ALA 5	LEU 255

There are 45 helices in PDB entry 9E6A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	11	Right-handed 310
Helix 2	AA2	A	12	23	Right-handed alpha
Helix 3	AA3	A	34	42	Right-handed alpha
Helix 4	AA4	A	44	58	Right-handed alpha
Helix 5	AA5	A	74	85	Right-handed alpha
Helix 6	AA6	A	85	103	Right-handed alpha
Helix 7	AA7	A	123	127	Right-handed 310
Helix 8	AA8	A	143	152	Right-handed alpha
Helix 9	AA9	A	154	165	Right-handed alpha
Helix 10	AB1	A	177	192	Right-handed alpha
Helix 11	AB2	A	232	240	Right-handed alpha
Helix 12	AB3	A	240	251	Right-handed alpha
Helix 13	AB4	B	12	23	Right-handed alpha
Helix 14	AB5	B	34	42	Right-handed alpha
Helix 15	AB6	B	44	58	Right-handed alpha
Helix 16	AB7	B	74	85	Right-handed alpha
Helix 17	AB8	B	85	103	Right-handed alpha
Helix 18	AB9	B	143	153	Right-handed alpha
Helix 19	AC1	B	154	165	Right-handed alpha
Helix 20	AC2	B	177	192	Right-handed alpha
Helix 21	AC3	B	214	216	Right-handed 310
Helix 22	AC4	B	232	251	Right-handed alpha
Helix 23	AC5	B	251	256	Right-handed alpha
Helix 24	AC6	C	7	11	Right-handed 310
Helix 25	AC7	C	12	23	Right-handed alpha
Helix 26	AC8	C	34	42	Right-handed alpha
Helix 27	AC9	C	44	58	Right-handed alpha
Helix 28	AD1	C	72	74	Right-handed 310
Helix 29	AD2	C	75	85	Right-handed alpha
Helix 30	AD3	C	85	103	Right-handed alpha
Helix 31	AD4	C	143	153	Right-handed alpha
Helix 32	AD5	C	154	165	Right-handed alpha
Helix 33	AD6	C	177	192	Right-handed alpha
Helix 34	AD7	C	232	240	Right-handed alpha
Helix 35	AD8	C	240	251	Right-handed alpha
Helix 36	AD9	D	7	11	Right-handed 310
Helix 37	AE1	D	12	23	Right-handed alpha
Helix 38	AE2	D	34	42	Right-handed alpha
Helix 39	AE3	D	44	58	Right-handed alpha
Helix 40	AE4	D	74	85	Right-handed alpha
Helix 41	AE5	D	85	103	Right-handed alpha
Helix 42	AE6	D	143	153	Right-handed alpha
Helix 43	AE7	D	154	165	Right-handed alpha
Helix 44	AE8	D	177	192	Right-handed alpha
Helix 45	AE9	D	232	251	Right-handed alpha

There are 8 sheets in PDB entry 9E6A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	67	70	anti-parallel
Strand 3	A	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	139	first strand
Strand 2	A	115	121	anti-parallel
Strand 3	A	105	112	anti-parallel
Strand 4	A	218	227	anti-parallel
Strand 5	A	204	212	anti-parallel
Strand 6	A	194	197	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	67	70	anti-parallel
Strand 3	B	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	139	first strand
Strand 2	B	115	121	anti-parallel
Strand 3	B	105	112	anti-parallel
Strand 4	B	218	227	anti-parallel
Strand 5	B	204	212	anti-parallel
Strand 6	B	194	197	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	67	70	anti-parallel
Strand 3	C	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	139	first strand
Strand 2	C	115	121	anti-parallel
Strand 3	C	105	112	anti-parallel
Strand 4	C	218	227	anti-parallel
Strand 5	C	204	212	anti-parallel
Strand 6	C	194	197	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	67	70	anti-parallel
Strand 3	D	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	139	first strand
Strand 2	D	115	121	anti-parallel
Strand 3	D	105	112	anti-parallel
Strand 4	D	218	227	anti-parallel
Strand 5	D	204	212	anti-parallel
Strand 6	D	194	197	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E6A

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E6A