Analysis of interatomic Contacts of Structural Units in PDB entry:
9E6D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E6D entry

There are 5 chains in PDB entry 9E6D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 1	LEU 292
B	THR 1	LEU 292
C	THR 1	LEU 292
D	THR 1	LEU 292
E	THR 1	LEU 292

There are 38 helices in PDB entry 9E6D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	15	Right-handed alpha
Helix 2	AA2	A	71	76	Right-handed 310
Helix 3	AA3	A	86	88	Right-handed 310
Helix 4	AA4	A	103	107	Right-handed 310
Helix 5	AA5	A	206	229	Right-handed alpha
Helix 6	AA6	A	230	234	Right-handed 310
Helix 7	AA7	A	235	258	Right-handed alpha
Helix 8	AA8	A	266	292	Right-handed alpha
Helix 9	AA9	B	3	15	Right-handed alpha
Helix 10	AB1	B	71	76	Right-handed 310
Helix 11	AB2	B	86	88	Right-handed 310
Helix 12	AB3	B	103	107	Right-handed 310
Helix 13	AB4	B	206	229	Right-handed alpha
Helix 14	AB5	B	235	258	Right-handed alpha
Helix 15	AB6	B	266	292	Right-handed alpha
Helix 16	AB7	C	3	15	Right-handed alpha
Helix 17	AB8	C	71	76	Right-handed 310
Helix 18	AB9	C	86	88	Right-handed 310
Helix 19	AC1	C	103	107	Right-handed 310
Helix 20	AC2	C	206	229	Right-handed alpha
Helix 21	AC3	C	230	234	Right-handed 310
Helix 22	AC4	C	235	258	Right-handed alpha
Helix 23	AC5	C	266	292	Right-handed alpha
Helix 24	AC6	D	3	15	Right-handed alpha
Helix 25	AC7	D	71	76	Right-handed 310
Helix 26	AC8	D	86	88	Right-handed 310
Helix 27	AC9	D	103	107	Right-handed 310
Helix 28	AD1	D	206	229	Right-handed alpha
Helix 29	AD2	D	230	234	Right-handed 310
Helix 30	AD3	D	235	258	Right-handed alpha
Helix 31	AD4	D	266	292	Right-handed alpha
Helix 32	AD5	E	3	15	Right-handed alpha
Helix 33	AD6	E	71	76	Right-handed 310
Helix 34	AD7	E	86	88	Right-handed 310
Helix 35	AD8	E	103	107	Right-handed 310
Helix 36	AD9	E	206	229	Right-handed alpha
Helix 37	AE1	E	235	258	Right-handed alpha
Helix 38	AE2	E	266	292	Right-handed alpha

There are 20 sheets in PDB entry 9E6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	47	first strand
Strand 2	A	52	64	anti-parallel
Strand 3	A	118	130	anti-parallel
Strand 4	A	98	100	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	84	first strand
Strand 2	A	110	114	anti-parallel
Strand 3	A	118	130	anti-parallel
Strand 4	A	52	64	anti-parallel
Strand 5	A	32	40	anti-parallel
Strand 6	A	159	168	parallel
Strand 7	A	183	186	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	142	151	anti-parallel
Strand 3	A	193	203	anti-parallel
Strand 4	A	177	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	142	151	anti-parallel
Strand 3	A	193	203	anti-parallel
Strand 4	A	188	189	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	47	first strand
Strand 2	B	52	64	anti-parallel
Strand 3	B	118	130	anti-parallel
Strand 4	B	98	100	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	84	first strand
Strand 2	B	110	114	anti-parallel
Strand 3	B	118	130	anti-parallel
Strand 4	B	52	64	anti-parallel
Strand 5	B	32	40	anti-parallel
Strand 6	B	159	168	parallel
Strand 7	B	183	186	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	142	151	anti-parallel
Strand 3	B	193	203	anti-parallel
Strand 4	B	177	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	142	151	anti-parallel
Strand 3	B	193	203	anti-parallel
Strand 4	B	188	189	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	47	first strand
Strand 2	C	52	64	anti-parallel
Strand 3	C	118	130	anti-parallel
Strand 4	C	98	100	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	84	first strand
Strand 2	C	110	114	anti-parallel
Strand 3	C	118	130	anti-parallel
Strand 4	C	52	64	anti-parallel
Strand 5	C	32	40	anti-parallel
Strand 6	C	159	168	parallel
Strand 7	C	183	186	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	142	151	anti-parallel
Strand 3	C	193	203	anti-parallel
Strand 4	C	177	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	142	151	anti-parallel
Strand 3	C	193	203	anti-parallel
Strand 4	C	188	189	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	47	first strand
Strand 2	D	52	64	anti-parallel
Strand 3	D	118	130	anti-parallel
Strand 4	D	98	100	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	84	first strand
Strand 2	D	110	114	anti-parallel
Strand 3	D	118	130	anti-parallel
Strand 4	D	52	64	anti-parallel
Strand 5	D	32	40	anti-parallel
Strand 6	D	159	168	parallel
Strand 7	D	183	186	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	94	first strand
Strand 2	D	142	151	anti-parallel
Strand 3	D	193	203	anti-parallel
Strand 4	D	177	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	94	first strand
Strand 2	D	142	151	anti-parallel
Strand 3	D	193	203	anti-parallel
Strand 4	D	188	189	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	47	first strand
Strand 2	E	52	64	anti-parallel
Strand 3	E	118	130	anti-parallel
Strand 4	E	98	100	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	84	first strand
Strand 2	E	110	114	anti-parallel
Strand 3	E	118	130	anti-parallel
Strand 4	E	52	64	anti-parallel
Strand 5	E	32	40	anti-parallel
Strand 6	E	159	168	parallel
Strand 7	E	183	186	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	94	first strand
Strand 2	E	142	151	anti-parallel
Strand 3	E	193	203	anti-parallel
Strand 4	E	177	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	94	first strand
Strand 2	E	142	151	anti-parallel
Strand 3	E	193	203	anti-parallel
Strand 4	E	188	189	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E6D

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E6D