Analysis of interatomic Contacts of Structural Units in PDB entry:
9E6G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E6G entry

There are 4 chains in PDB entry 9E6G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 23	LEU 233
B	GLY 22	LEU 235
C	LEU 33	VAL 125
D	ALA 42	ARG 141

There are 10 helices in PDB entry 9E6G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	38	Right-handed alpha
Helix 2	AA2	A	141	146	Right-handed alpha
Helix 3	AA3	A	201	203	Right-handed 310
Helix 4	AA4	A	218	222	Right-handed 310
Helix 5	AA5	B	32	36	Right-handed 310
Helix 6	AA6	B	95	100	Right-handed alpha
Helix 7	AA7	B	142	146	Right-handed 310
Helix 8	AA8	B	200	205	Right-handed alpha
Helix 9	AA9	B	218	222	Right-handed 310
Helix 10	AB1	D	113	117	Right-handed 310

There are 16 sheets in PDB entry 9E6G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	29	first strand
Strand 2	A	44	50	anti-parallel
Strand 3	A	89	93	anti-parallel
Strand 4	A	74	76	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	60	65	anti-parallel
Strand 3	A	105	110	anti-parallel
Strand 4	A	118	122	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	148	158	anti-parallel
Strand 3	A	190	199	anti-parallel
Strand 4	A	177	179	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	168	first strand
Strand 2	A	210	214	anti-parallel
Strand 3	A	223	226	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	44	52	anti-parallel
Strand 3	B	86	93	anti-parallel
Strand 4	B	74	75	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	60	65	anti-parallel
Strand 3	B	105	110	anti-parallel
Strand 4	B	118	122	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	137	first strand
Strand 2	B	148	158	anti-parallel
Strand 3	B	190	199	anti-parallel
Strand 4	B	177	179	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	137	first strand
Strand 2	B	148	158	anti-parallel
Strand 3	B	190	199	anti-parallel
Strand 4	B	183	184	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	173	first strand
Strand 2	B	164	169	anti-parallel
Strand 3	B	208	214	anti-parallel
Strand 4	B	223	228	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	122	124	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	91	93	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	83	first strand
Strand 2	C	63	69	anti-parallel
Strand 3	C	103	105	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	83	first strand
Strand 2	C	63	69	anti-parallel
Strand 3	C	107	109	anti-parallel
Strand 4	C	115	117	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	64	66	anti-parallel
Strand 3	D	104	108	anti-parallel
Strand 4	D	97	100	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	139	140	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	77	first strand
Strand 2	D	121	124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E6G

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E6G