Analysis of interatomic Contacts of Structural Units in PDB entry:
9E6K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9E6K entry

There are 3 chains in PDB entry 9E6K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 1CYS 231
L
 GLU 1CYS 234
C
 ALA 60ARG 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 9E6K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
95 99Right-handed 310
Helix 2
AA2
H
106 116Right-handed 310
Helix 3
AA3
H
171 173Right-handed 310
Helix 4
AA4
H
200 204Right-handed 310
Helix 5
AA5
H
216 219Right-handed 310
Helix 6
AA6
L
95 99Right-handed 310
Helix 7
AA7
L
141 148Right-handed alpha
Helix 8
AA8
L
203 208Right-handed alpha
Helix 9
AA9
C
111 116Right-handed alpha
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There are 12 sheets in PDB entry 9E6K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 26anti-parallel
Strand 3
H
86 92anti-parallel
Strand 4
H
76 81anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 13first strand
Strand 2
H
122 126parallel
Strand 3
H
100 105anti-parallel
Strand 4
H
39 44anti-parallel
Strand 5
H
50 56anti-parallel
Strand 6
H
65 67anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
135 139first strand
Strand 2
H
151 160anti-parallel
Strand 3
H
191 199anti-parallel
Strand 4
H
179 180anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
135 139first strand
Strand 2
H
151 160anti-parallel
Strand 3
H
191 199anti-parallel
Strand 4
H
184 185anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
166 169first strand
Strand 2
H
210 215anti-parallel
Strand 3
H
220 225anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
76 83anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
122 125parallel
Strand 3
L
101 106anti-parallel
Strand 4
L
39 44anti-parallel
Strand 5
L
51 55anti-parallel
Strand 6
L
66 67anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
122 125parallel
Strand 3
L
101 106anti-parallel
Strand 4
L
117 118anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
134 138first strand
Strand 2
L
149 157anti-parallel
Strand 3
L
194 202anti-parallel
Strand 4
L
179 183anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
174 175first strand
Strand 2
L
164 170anti-parallel
Strand 3
L
211 218anti-parallel
Strand 4
L
225 230anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 65first strand
Strand 2
C
76 77anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 121first strand
Strand 2
C
133 135anti-parallel
Strand 3
C
141 142anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il