Analysis of interatomic Contacts of Structural Units in PDB entry:
9E6L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E6L entry

There are 12 chains in PDB entry 9E6L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ARG 103	LYS 136
H	ARG 103	LYS 136
I	ARG 103	LYS 136
J	ARG 103	LYS 136
K	ARG 103	LYS 136
X	T 1	T 18
C	PHE 80	GLU 400
F	PHE 80	GLU 400
B	VAL 81	GLU 400
E	VAL 81	GLU 400
A	PHE 80	GLU 400
D	PHE 80	GLU 400

There are103 helices in PDB entry 9E6L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	109	115	Right-handed alpha
Helix 2	AA2	G	116	128	Right-handed alpha
Helix 3	AA3	H	116	129	Right-handed alpha
Helix 4	AA4	I	109	115	Right-handed alpha
Helix 5	AA5	I	116	128	Right-handed alpha
Helix 6	AA6	J	110	115	Right-handed alpha
Helix 7	AA7	J	116	128	Right-handed alpha
Helix 8	AA8	K	110	115	Right-handed alpha
Helix 9	AA9	K	116	129	Right-handed alpha
Helix 10	AB1	C	82	87	Right-handed 310
Helix 11	AB2	C	92	102	Right-handed alpha
Helix 12	AB3	C	106	113	Right-handed alpha
Helix 13	AB4	C	114	120	Right-handed alpha
Helix 14	AB5	C	125	140	Right-handed alpha
Helix 15	AB6	C	147	155	Right-handed alpha
Helix 16	AB7	C	164	172	Right-handed alpha
Helix 17	AB8	C	190	202	Right-handed alpha
Helix 18	AB9	C	225	237	Right-handed alpha
Helix 19	AC1	C	239	246	Right-handed alpha
Helix 20	AC2	C	254	270	Right-handed alpha
Helix 21	AC3	C	283	290	Right-handed alpha
Helix 22	AC4	C	292	294	Right-handed 310
Helix 23	AC5	C	295	318	Right-handed alpha
Helix 24	AC6	C	346	354	Right-handed alpha
Helix 25	AC7	C	396	400	Right-handed 310
Helix 26	AC8	F	82	87	Right-handed 310
Helix 27	AC9	F	92	102	Right-handed alpha
Helix 28	AD1	F	106	113	Right-handed alpha
Helix 29	AD2	F	114	121	Right-handed alpha
Helix 30	AD3	F	125	140	Right-handed alpha
Helix 31	AD4	F	147	156	Right-handed alpha
Helix 32	AD5	F	164	172	Right-handed alpha
Helix 33	AD6	F	190	202	Right-handed alpha
Helix 34	AD7	F	205	209	Right-handed 310
Helix 35	AD8	F	225	237	Right-handed alpha
Helix 36	AD9	F	239	246	Right-handed alpha
Helix 37	AE1	F	254	272	Right-handed alpha
Helix 38	AE2	F	285	290	Right-handed alpha
Helix 39	AE3	F	295	318	Right-handed alpha
Helix 40	AE4	F	346	354	Right-handed alpha
Helix 41	AE5	F	396	400	Right-handed 310
Helix 42	AE6	B	82	87	Right-handed 310
Helix 43	AE7	B	92	102	Right-handed alpha
Helix 44	AE8	B	106	113	Right-handed alpha
Helix 45	AE9	B	114	121	Right-handed alpha
Helix 46	AF1	B	125	140	Right-handed alpha
Helix 47	AF2	B	147	156	Right-handed alpha
Helix 48	AF3	B	164	172	Right-handed alpha
Helix 49	AF4	B	190	202	Right-handed alpha
Helix 50	AF5	B	203	204	Right-handed 310
Helix 51	AF6	B	205	209	Right-handed 310
Helix 52	AF7	B	225	237	Right-handed alpha
Helix 53	AF8	B	239	246	Right-handed alpha
Helix 54	AF9	B	254	272	Right-handed alpha
Helix 55	AG1	B	282	290	Right-handed alpha
Helix 56	AG2	B	292	294	Right-handed 310
Helix 57	AG3	B	295	318	Right-handed alpha
Helix 58	AG4	B	346	354	Right-handed alpha
Helix 59	AG5	E	82	87	Right-handed 310
Helix 60	AG6	E	92	102	Right-handed alpha
Helix 61	AG7	E	106	113	Right-handed alpha
Helix 62	AG8	E	114	121	Right-handed alpha
Helix 63	AG9	E	125	140	Right-handed alpha
Helix 64	AH1	E	147	155	Right-handed alpha
Helix 65	AH2	E	164	171	Right-handed alpha
Helix 66	AH3	E	190	202	Right-handed alpha
Helix 67	AH4	E	203	204	Right-handed 310
Helix 68	AH5	E	205	209	Right-handed 310
Helix 69	AH6	E	225	237	Right-handed alpha
Helix 70	AH7	E	239	246	Right-handed alpha
Helix 71	AH8	E	254	272	Right-handed alpha
Helix 72	AH9	E	283	290	Right-handed alpha
Helix 73	AI1	E	295	318	Right-handed alpha
Helix 74	AI2	E	346	354	Right-handed alpha
Helix 75	AI3	E	396	400	Right-handed 310
Helix 76	AI4	A	82	87	Right-handed 310
Helix 77	AI5	A	92	102	Right-handed alpha
Helix 78	AI6	A	106	113	Right-handed alpha
Helix 79	AI7	A	114	120	Right-handed alpha
Helix 80	AI8	A	125	140	Right-handed alpha
Helix 81	AI9	A	146	155	Right-handed alpha
Helix 82	AJ1	A	164	172	Right-handed alpha
Helix 83	AJ2	A	190	202	Right-handed alpha
Helix 84	AJ3	A	225	236	Right-handed alpha
Helix 85	AJ4	A	239	246	Right-handed alpha
Helix 86	AJ5	A	254	272	Right-handed alpha
Helix 87	AJ6	A	282	290	Right-handed alpha
Helix 88	AJ7	A	295	318	Right-handed alpha
Helix 89	AJ8	A	346	354	Right-handed alpha
Helix 90	AJ9	D	82	87	Right-handed 310
Helix 91	AK1	D	92	102	Right-handed alpha
Helix 92	AK2	D	106	113	Right-handed alpha
Helix 93	AK3	D	114	120	Right-handed alpha
Helix 94	AK4	D	125	140	Right-handed alpha
Helix 95	AK5	D	147	155	Right-handed alpha
Helix 96	AK6	D	164	171	Right-handed alpha
Helix 97	AK7	D	190	202	Right-handed alpha
Helix 98	AK8	D	225	236	Right-handed alpha
Helix 99	AK9	D	239	246	Right-handed alpha
Helix 100	AL1	D	254	270	Right-handed alpha
Helix 101	AL2	D	282	290	Right-handed alpha
Helix 102	AL3	D	295	318	Right-handed alpha
Helix 103	AL4	D	346	354	Right-handed alpha

There are 18 sheets in PDB entry 9E6L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	B	247	251	anti-parallel
Strand 3	B	214	219	parallel
Strand 4	B	274	280	parallel
Strand 5	B	320	325	parallel
Strand 6	B	180	185	parallel
Strand 7	B	356	362	parallel
Strand 8	B	367	374	anti-parallel
Strand 9	B	382	388	anti-parallel
Strand 10	B	391	393	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	175	176	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	393	first strand
Strand 2	C	382	388	anti-parallel
Strand 3	C	367	374	anti-parallel
Strand 4	C	356	362	anti-parallel
Strand 5	C	180	185	parallel
Strand 6	C	320	325	parallel
Strand 7	C	274	280	parallel
Strand 8	C	214	219	parallel
Strand 9	C	247	251	parallel
Strand 10	D	145	146	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	342	344	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	146	first strand
Strand 2	E	247	251	anti-parallel
Strand 3	E	214	219	parallel
Strand 4	E	274	280	parallel
Strand 5	E	320	325	parallel
Strand 6	E	180	185	parallel
Strand 7	E	356	362	parallel
Strand 8	E	367	374	anti-parallel
Strand 9	E	382	388	anti-parallel
Strand 10	E	391	393	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	160	first strand
Strand 2	F	175	176	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	251	first strand
Strand 2	F	214	219	parallel
Strand 3	F	274	280	parallel
Strand 4	F	320	325	parallel
Strand 5	F	180	185	parallel
Strand 6	F	356	362	parallel
Strand 7	F	367	374	anti-parallel
Strand 8	F	382	388	anti-parallel
Strand 9	F	391	393	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	327	329	first strand
Strand 2	F	342	344	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	146	first strand
Strand 2	A	247	251	anti-parallel
Strand 3	A	214	219	parallel
Strand 4	A	274	280	parallel
Strand 5	A	320	325	parallel
Strand 6	A	180	185	parallel
Strand 7	A	356	362	parallel
Strand 8	A	367	374	anti-parallel
Strand 9	A	382	388	anti-parallel
Strand 10	A	391	393	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	175	176	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	342	344	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	146	first strand
Strand 2	D	247	251	anti-parallel
Strand 3	D	214	219	parallel
Strand 4	D	274	280	parallel
Strand 5	D	320	325	parallel
Strand 6	D	180	185	parallel
Strand 7	D	356	362	parallel
Strand 8	D	367	374	anti-parallel
Strand 9	D	382	388	anti-parallel
Strand 10	D	391	393	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	160	first strand
Strand 2	E	175	176	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	327	329	first strand
Strand 2	E	342	344	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	160	first strand
Strand 2	A	175	176	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	342	344	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	175	176	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	342	344	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E6L

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E6L