Analysis of interatomic Contacts of Structural Units in PDB entry:
9E6M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E6M entry

There are 4 chains in PDB entry 9E6M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 72	ARG 636
B	GLU 84	ARG 636
C	LEU 85	ARG 636
D	GLU 72	ARG 636

There are132 helices in PDB entry 9E6M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	96	102	Right-handed alpha
Helix 2	AA2	A	108	112	Right-handed 310
Helix 3	AA3	A	113	120	Right-handed alpha
Helix 4	AA4	A	132	145	Right-handed alpha
Helix 5	AA5	A	149	162	Right-handed alpha
Helix 6	AA6	A	164	175	Right-handed alpha
Helix 7	AA7	A	175	184	Right-handed alpha
Helix 8	AA8	A	186	194	Right-handed alpha
Helix 9	AA9	A	195	198	Right-handed 310
Helix 10	AB1	A	210	212	Right-handed 310
Helix 11	AB2	A	214	221	Right-handed alpha
Helix 12	AB3	A	244	248	Right-handed 310
Helix 13	AB4	A	249	262	Right-handed alpha
Helix 14	AB5	A	266	268	Right-handed 310
Helix 15	AB6	A	281	287	Right-handed alpha
Helix 16	AB7	A	299	319	Right-handed alpha
Helix 17	AB8	A	330	341	Right-handed alpha
Helix 18	AB9	A	352	371	Right-handed alpha
Helix 19	AC1	A	385	404	Right-handed alpha
Helix 20	AC2	A	406	411	Right-handed alpha
Helix 21	AC3	A	424	431	Right-handed 310
Helix 22	AC4	A	432	439	Right-handed 310
Helix 23	AC5	A	447	456	Right-handed alpha
Helix 24	AC6	A	471	482	Right-handed alpha
Helix 25	AC7	A	493	497	Right-handed 310
Helix 26	AC8	A	500	507	Right-handed alpha
Helix 27	AC9	A	536	539	Right-handed 310
Helix 28	AD1	A	540	552	Right-handed alpha
Helix 29	AD2	A	557	570	Right-handed alpha
Helix 30	AD3	A	573	579	Right-handed alpha
Helix 31	AD4	A	585	587	Right-handed 310
Helix 32	AD5	A	588	607	Right-handed alpha
Helix 33	AD6	A	618	626	Right-handed alpha
Helix 34	AD7	B	96	103	Right-handed alpha
Helix 35	AD8	B	108	112	Right-handed 310
Helix 36	AD9	B	113	120	Right-handed alpha
Helix 37	AE1	B	132	145	Right-handed alpha
Helix 38	AE2	B	149	162	Right-handed alpha
Helix 39	AE3	B	164	175	Right-handed alpha
Helix 40	AE4	B	175	184	Right-handed alpha
Helix 41	AE5	B	186	194	Right-handed alpha
Helix 42	AE6	B	195	198	Right-handed 310
Helix 43	AE7	B	210	212	Right-handed 310
Helix 44	AE8	B	214	221	Right-handed alpha
Helix 45	AE9	B	244	248	Right-handed 310
Helix 46	AF1	B	249	262	Right-handed alpha
Helix 47	AF2	B	266	268	Right-handed 310
Helix 48	AF3	B	281	287	Right-handed alpha
Helix 49	AF4	B	299	319	Right-handed alpha
Helix 50	AF5	B	330	341	Right-handed alpha
Helix 51	AF6	B	352	371	Right-handed alpha
Helix 52	AF7	B	385	404	Right-handed alpha
Helix 53	AF8	B	406	411	Right-handed alpha
Helix 54	AF9	B	424	431	Right-handed 310
Helix 55	AG1	B	432	439	Right-handed 310
Helix 56	AG2	B	447	456	Right-handed alpha
Helix 57	AG3	B	471	482	Right-handed alpha
Helix 58	AG4	B	493	497	Right-handed 310
Helix 59	AG5	B	500	507	Right-handed alpha
Helix 60	AG6	B	536	539	Right-handed 310
Helix 61	AG7	B	540	552	Right-handed alpha
Helix 62	AG8	B	557	570	Right-handed alpha
Helix 63	AG9	B	573	579	Right-handed alpha
Helix 64	AH1	B	585	587	Right-handed 310
Helix 65	AH2	B	588	607	Right-handed alpha
Helix 66	AH3	B	618	626	Right-handed alpha
Helix 67	AH4	C	96	102	Right-handed alpha
Helix 68	AH5	C	108	112	Right-handed 310
Helix 69	AH6	C	113	120	Right-handed alpha
Helix 70	AH7	C	132	145	Right-handed alpha
Helix 71	AH8	C	149	162	Right-handed alpha
Helix 72	AH9	C	164	175	Right-handed alpha
Helix 73	AI1	C	175	184	Right-handed alpha
Helix 74	AI2	C	186	194	Right-handed alpha
Helix 75	AI3	C	195	198	Right-handed 310
Helix 76	AI4	C	210	212	Right-handed 310
Helix 77	AI5	C	214	221	Right-handed alpha
Helix 78	AI6	C	244	248	Right-handed 310
Helix 79	AI7	C	249	262	Right-handed alpha
Helix 80	AI8	C	266	268	Right-handed 310
Helix 81	AI9	C	281	286	Right-handed alpha
Helix 82	AJ1	C	299	319	Right-handed alpha
Helix 83	AJ2	C	330	345	Right-handed alpha
Helix 84	AJ3	C	352	371	Right-handed alpha
Helix 85	AJ4	C	385	404	Right-handed alpha
Helix 86	AJ5	C	406	411	Right-handed alpha
Helix 87	AJ6	C	424	431	Right-handed 310
Helix 88	AJ7	C	432	439	Right-handed 310
Helix 89	AJ8	C	447	456	Right-handed alpha
Helix 90	AJ9	C	471	482	Right-handed alpha
Helix 91	AK1	C	493	497	Right-handed 310
Helix 92	AK2	C	500	507	Right-handed alpha
Helix 93	AK3	C	536	539	Right-handed 310
Helix 94	AK4	C	540	552	Right-handed alpha
Helix 95	AK5	C	557	570	Right-handed alpha
Helix 96	AK6	C	573	579	Right-handed alpha
Helix 97	AK7	C	585	587	Right-handed 310
Helix 98	AK8	C	588	607	Right-handed alpha
Helix 99	AK9	C	618	626	Right-handed alpha
Helix 100	AL1	D	96	103	Right-handed alpha
Helix 101	AL2	D	108	112	Right-handed 310
Helix 102	AL3	D	113	120	Right-handed alpha
Helix 103	AL4	D	132	145	Right-handed alpha
Helix 104	AL5	D	149	162	Right-handed alpha
Helix 105	AL6	D	164	175	Right-handed alpha
Helix 106	AL7	D	175	184	Right-handed alpha
Helix 107	AL8	D	186	194	Right-handed alpha
Helix 108	AL9	D	195	198	Right-handed 310
Helix 109	AM1	D	210	212	Right-handed 310
Helix 110	AM2	D	214	221	Right-handed alpha
Helix 111	AM3	D	244	248	Right-handed 310
Helix 112	AM4	D	249	262	Right-handed alpha
Helix 113	AM5	D	266	268	Right-handed 310
Helix 114	AM6	D	281	287	Right-handed alpha
Helix 115	AM7	D	299	319	Right-handed alpha
Helix 116	AM8	D	330	341	Right-handed alpha
Helix 117	AM9	D	352	371	Right-handed alpha
Helix 118	AN1	D	385	404	Right-handed alpha
Helix 119	AN2	D	406	411	Right-handed alpha
Helix 120	AN3	D	424	431	Right-handed 310
Helix 121	AN4	D	432	439	Right-handed 310
Helix 122	AN5	D	447	456	Right-handed alpha
Helix 123	AN6	D	471	482	Right-handed alpha
Helix 124	AN7	D	493	497	Right-handed 310
Helix 125	AN8	D	500	507	Right-handed alpha
Helix 126	AN9	D	536	539	Right-handed 310
Helix 127	AO1	D	540	552	Right-handed alpha
Helix 128	AO2	D	557	570	Right-handed alpha
Helix 129	AO3	D	573	579	Right-handed alpha
Helix 130	AO4	D	585	587	Right-handed 310
Helix 131	AO5	D	588	607	Right-handed alpha
Helix 132	AO6	D	618	626	Right-handed alpha

There are 15 sheets in PDB entry 9E6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	94	first strand
Strand 2	C	90	94	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	208	first strand
Strand 2	A	270	276	parallel
Strand 3	A	229	233	parallel
Strand 4	A	323	326	parallel
Strand 5	A	346	349	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	414	418	anti-parallel
Strand 3	A	379	382	parallel
Strand 4	A	459	462	parallel
Strand 5	A	486	489	parallel
Strand 6	A	513	516	parallel
Strand 7	A	533	534	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	525	first strand
Strand 2	A	528	530	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	D	634	635	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	94	first strand
Strand 2	D	90	94	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	208	first strand
Strand 2	B	270	276	parallel
Strand 3	B	229	233	parallel
Strand 4	B	323	326	parallel
Strand 5	B	346	349	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	422	first strand
Strand 2	B	414	418	anti-parallel
Strand 3	B	379	382	parallel
Strand 4	B	459	462	parallel
Strand 5	B	486	489	parallel
Strand 6	B	513	516	parallel
Strand 7	B	533	534	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	525	first strand
Strand 2	B	528	530	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	208	first strand
Strand 2	C	270	276	parallel
Strand 3	C	229	233	parallel
Strand 4	C	323	326	parallel
Strand 5	C	346	349	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	422	first strand
Strand 2	C	414	418	anti-parallel
Strand 3	C	379	382	parallel
Strand 4	C	459	462	parallel
Strand 5	C	486	489	parallel
Strand 6	C	513	516	parallel
Strand 7	C	533	534	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	523	525	first strand
Strand 2	C	528	530	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	208	first strand
Strand 2	D	270	276	parallel
Strand 3	D	229	233	parallel
Strand 4	D	323	326	parallel
Strand 5	D	346	349	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	421	422	first strand
Strand 2	D	414	418	anti-parallel
Strand 3	D	379	382	parallel
Strand 4	D	459	462	parallel
Strand 5	D	486	489	parallel
Strand 6	D	513	516	parallel
Strand 7	D	533	534	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	523	525	first strand
Strand 2	D	528	530	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E6M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E6M