Analysis of interatomic Contacts of Structural Units in PDB entry:
9E6N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E6N entry

There are 12 chains in PDB entry 9E6N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 80	GLU 400
B	VAL 81	GLU 400
C	PHE 80	GLU 400
D	PHE 80	GLU 400
E	VAL 81	GLU 400
F	PHE 80	GLU 400
G	LYS 121	LYS 152
H	LYS 121	LYS 152
I	LYS 121	GLN 153
J	LYS 121	LYS 152
K	LYS 121	LYS 152
X	T 1	T 18

There are 98 helices in PDB entry 9E6N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	87	Right-handed 310
Helix 2	AA2	A	92	102	Right-handed alpha
Helix 3	AA3	A	106	113	Right-handed alpha
Helix 4	AA4	A	114	120	Right-handed alpha
Helix 5	AA5	A	125	140	Right-handed alpha
Helix 6	AA6	A	146	156	Right-handed alpha
Helix 7	AA7	A	164	172	Right-handed alpha
Helix 8	AA8	A	190	202	Right-handed alpha
Helix 9	AA9	A	205	209	Right-handed 310
Helix 10	AB1	A	225	236	Right-handed alpha
Helix 11	AB2	A	239	246	Right-handed alpha
Helix 12	AB3	A	254	272	Right-handed alpha
Helix 13	AB4	A	285	290	Right-handed alpha
Helix 14	AB5	A	295	318	Right-handed alpha
Helix 15	AB6	A	347	354	Right-handed alpha
Helix 16	AB7	B	82	87	Right-handed 310
Helix 17	AB8	B	92	102	Right-handed alpha
Helix 18	AB9	B	106	113	Right-handed alpha
Helix 19	AC1	B	114	121	Right-handed alpha
Helix 20	AC2	B	125	140	Right-handed alpha
Helix 21	AC3	B	147	155	Right-handed alpha
Helix 22	AC4	B	164	171	Right-handed alpha
Helix 23	AC5	B	190	202	Right-handed alpha
Helix 24	AC6	B	205	209	Right-handed 310
Helix 25	AC7	B	225	236	Right-handed alpha
Helix 26	AC8	B	239	246	Right-handed alpha
Helix 27	AC9	B	254	270	Right-handed alpha
Helix 28	AD1	B	282	290	Right-handed alpha
Helix 29	AD2	B	295	318	Right-handed alpha
Helix 30	AD3	B	347	354	Right-handed alpha
Helix 31	AD4	C	82	87	Right-handed 310
Helix 32	AD5	C	92	102	Right-handed alpha
Helix 33	AD6	C	106	113	Right-handed alpha
Helix 34	AD7	C	114	119	Right-handed alpha
Helix 35	AD8	C	125	140	Right-handed alpha
Helix 36	AD9	C	147	156	Right-handed alpha
Helix 37	AE1	C	164	171	Right-handed alpha
Helix 38	AE2	C	190	202	Right-handed alpha
Helix 39	AE3	C	205	209	Right-handed 310
Helix 40	AE4	C	225	236	Right-handed alpha
Helix 41	AE5	C	239	245	Right-handed alpha
Helix 42	AE6	C	254	270	Right-handed alpha
Helix 43	AE7	C	282	290	Right-handed alpha
Helix 44	AE8	C	292	294	Right-handed 310
Helix 45	AE9	C	295	318	Right-handed alpha
Helix 46	AF1	C	346	354	Right-handed alpha
Helix 47	AF2	D	82	87	Right-handed 310
Helix 48	AF3	D	92	102	Right-handed alpha
Helix 49	AF4	D	106	113	Right-handed alpha
Helix 50	AF5	D	114	121	Right-handed alpha
Helix 51	AF6	D	125	140	Right-handed alpha
Helix 52	AF7	D	147	156	Right-handed alpha
Helix 53	AF8	D	164	172	Right-handed alpha
Helix 54	AF9	D	190	202	Right-handed alpha
Helix 55	AG1	D	205	209	Right-handed 310
Helix 56	AG2	D	225	237	Right-handed alpha
Helix 57	AG3	D	239	245	Right-handed alpha
Helix 58	AG4	D	254	272	Right-handed alpha
Helix 59	AG5	D	285	290	Right-handed alpha
Helix 60	AG6	D	292	294	Right-handed 310
Helix 61	AG7	D	295	318	Right-handed alpha
Helix 62	AG8	D	346	354	Right-handed alpha
Helix 63	AG9	E	82	87	Right-handed 310
Helix 64	AH1	E	92	102	Right-handed alpha
Helix 65	AH2	E	106	113	Right-handed alpha
Helix 66	AH3	E	114	120	Right-handed alpha
Helix 67	AH4	E	125	140	Right-handed alpha
Helix 68	AH5	E	147	155	Right-handed alpha
Helix 69	AH6	E	164	171	Right-handed alpha
Helix 70	AH7	E	190	202	Right-handed alpha
Helix 71	AH8	E	205	209	Right-handed 310
Helix 72	AH9	E	225	237	Right-handed alpha
Helix 73	AI1	E	239	246	Right-handed alpha
Helix 74	AI2	E	254	270	Right-handed alpha
Helix 75	AI3	E	285	290	Right-handed alpha
Helix 76	AI4	E	292	294	Right-handed 310
Helix 77	AI5	E	295	318	Right-handed alpha
Helix 78	AI6	E	346	354	Right-handed alpha
Helix 79	AI7	F	82	87	Right-handed 310
Helix 80	AI8	F	92	102	Right-handed alpha
Helix 81	AI9	F	106	113	Right-handed alpha
Helix 82	AJ1	F	114	120	Right-handed alpha
Helix 83	AJ2	F	125	140	Right-handed alpha
Helix 84	AJ3	F	147	156	Right-handed alpha
Helix 85	AJ4	F	164	172	Right-handed alpha
Helix 86	AJ5	F	190	202	Right-handed alpha
Helix 87	AJ6	F	205	209	Right-handed 310
Helix 88	AJ7	F	225	237	Right-handed alpha
Helix 89	AJ8	F	239	246	Right-handed alpha
Helix 90	AJ9	F	254	272	Right-handed alpha
Helix 91	AK1	F	282	290	Right-handed alpha
Helix 92	AK2	F	295	318	Right-handed alpha
Helix 93	AK3	F	347	354	Right-handed alpha
Helix 94	AK4	G	124	137	Right-handed alpha
Helix 95	AK5	H	123	137	Right-handed alpha
Helix 96	AK6	I	123	137	Right-handed alpha
Helix 97	AK7	J	123	137	Right-handed alpha
Helix 98	AK8	K	123	136	Right-handed alpha

There are 18 sheets in PDB entry 9E6N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	160	first strand
Strand 2	A	175	176	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	393	first strand
Strand 2	A	382	388	anti-parallel
Strand 3	A	367	374	anti-parallel
Strand 4	A	356	362	anti-parallel
Strand 5	A	180	184	parallel
Strand 6	A	320	325	parallel
Strand 7	A	276	280	parallel
Strand 8	A	215	219	parallel
Strand 9	A	247	251	parallel
Strand 10	B	145	146	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	342	344	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	175	176	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	393	first strand
Strand 2	B	382	388	anti-parallel
Strand 3	B	367	374	anti-parallel
Strand 4	B	356	362	anti-parallel
Strand 5	B	180	185	parallel
Strand 6	B	320	325	parallel
Strand 7	B	274	280	parallel
Strand 8	B	214	219	parallel
Strand 9	B	247	251	parallel
Strand 10	C	145	146	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	342	344	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	175	176	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	393	first strand
Strand 2	C	382	388	anti-parallel
Strand 3	C	367	374	anti-parallel
Strand 4	C	356	362	anti-parallel
Strand 5	C	180	185	parallel
Strand 6	C	320	325	parallel
Strand 7	C	274	280	parallel
Strand 8	C	214	219	parallel
Strand 9	C	247	251	parallel
Strand 10	D	145	146	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	342	344	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	175	176	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	393	first strand
Strand 2	D	382	388	anti-parallel
Strand 3	D	367	374	anti-parallel
Strand 4	D	356	362	anti-parallel
Strand 5	D	180	185	parallel
Strand 6	D	320	325	parallel
Strand 7	D	274	280	parallel
Strand 8	D	214	219	parallel
Strand 9	D	247	251	parallel
Strand 10	E	145	146	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	342	344	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	160	first strand
Strand 2	E	175	176	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	391	393	first strand
Strand 2	E	382	388	anti-parallel
Strand 3	E	367	374	anti-parallel
Strand 4	E	356	362	anti-parallel
Strand 5	E	180	185	parallel
Strand 6	E	320	325	parallel
Strand 7	E	274	280	parallel
Strand 8	E	214	219	parallel
Strand 9	E	247	251	parallel
Strand 10	F	145	146	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	327	329	first strand
Strand 2	E	342	344	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	160	first strand
Strand 2	F	175	176	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	251	first strand
Strand 2	F	214	219	parallel
Strand 3	F	274	280	parallel
Strand 4	F	320	325	parallel
Strand 5	F	180	184	parallel
Strand 6	F	356	362	parallel
Strand 7	F	367	374	anti-parallel
Strand 8	F	382	388	anti-parallel
Strand 9	F	391	393	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	327	329	first strand
Strand 2	F	342	344	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E6N

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E6N