Analysis of interatomic Contacts of Structural Units in PDB entry:
9E6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9E6U entry

There are 2 chains in PDB entry 9E6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 40GLU 416
B
 GLY 41GLU 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9E6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 78Right-handed alpha
Helix 2
AA2
A
81 96Right-handed alpha
Helix 3
AA3
A
138 149Right-handed alpha
Helix 4
AA4
A
167 177Right-handed alpha
Helix 5
AA5
A
264 268Right-handed 310
Helix 6
AA6
A
295 300Right-handed alpha
Helix 7
AA7
A
301 310Right-handed alpha
Helix 8
AA8
A
314 326Right-handed alpha
Helix 9
AA9
B
54 78Right-handed alpha
Helix 10
AB1
B
81 96Right-handed alpha
Helix 11
AB2
B
138 151Right-handed alpha
Helix 12
AB3
B
167 177Right-handed alpha
Helix 13
AB4
B
264 268Right-handed 310
Helix 14
AB5
B
301 310Right-handed alpha
Helix 15
AB6
B
314 328Right-handed alpha
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There are 5 sheets in PDB entry 9E6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
127 133parallel
Strand 3
A
115 121anti-parallel
Strand 4
A
246 252anti-parallel
Strand 5
A
235 241anti-parallel
Strand 6
A
42 51anti-parallel
Strand 7
A
376 383anti-parallel
Strand 8
A
390 395anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
285 291anti-parallel
Strand 3
A
342 349anti-parallel
Strand 4
A
364 372anti-parallel
Strand 5
A
407 411anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
285 291anti-parallel
Strand 3
A
342 349anti-parallel
Strand 4
A
364 372anti-parallel
Strand 5
A
414 415anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 166first strand
Strand 2
B
127 133parallel
Strand 3
B
115 121anti-parallel
Strand 4
B
246 252anti-parallel
Strand 5
B
235 241anti-parallel
Strand 6
B
42 51anti-parallel
Strand 7
B
376 383anti-parallel
Strand 8
B
389 395anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 276first strand
Strand 2
B
285 293anti-parallel
Strand 3
B
340 350anti-parallel
Strand 4
B
364 372anti-parallel
Strand 5
B
407 415anti-parallel
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