Analysis of interatomic Contacts of Structural Units in PDB entry:
9E76

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E76 entry

There are 19 chains in PDB entry 9E76 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	TYR 345
C	SER 16	GLN 213
D	SER 7	GLU 164
E	MET 1	CYS 160
F	MET 1	CYS 160
G	MET 1	CYS 160
H	MET 1	CYS 160
I	MET 1	CYS 160
J	MET 1	CYS 160
K	MET 1	CYS 160
M	MET 1	PHE 71
N	ASP 212	LYS 263
O	THR 7	LEU 75
Q	GLN 3	VAL 127
R	GLN 3	VAL 127
S	GLN 3	VAL 127
T	GLN 3	VAL 127
L	MET 1	CYS 160
A	GLU 3	MET 827

There are142 helices in PDB entry 9E76. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	2	22	Right-handed alpha
Helix 2	AA2	B	26	35	Right-handed alpha
Helix 3	AA3	B	38	47	Right-handed alpha
Helix 4	AA4	B	59	63	Right-handed 310
Helix 5	AA5	B	64	86	Right-handed alpha
Helix 6	AA6	B	88	116	Right-handed alpha
Helix 7	AA7	B	119	127	Right-handed alpha
Helix 8	AA8	B	128	132	Right-handed 310
Helix 9	AA9	B	135	142	Right-handed 310
Helix 10	AB1	B	144	152	Right-handed alpha
Helix 11	AB2	B	153	156	Right-handed 310
Helix 12	AB3	B	158	165	Right-handed 310
Helix 13	AB4	B	173	200	Right-handed alpha
Helix 14	AB5	B	203	228	Right-handed alpha
Helix 15	AB6	B	234	239	Right-handed alpha
Helix 16	AB7	B	250	259	Right-handed alpha
Helix 17	AB8	B	261	271	Right-handed alpha
Helix 18	AB9	B	272	276	Right-handed 310
Helix 19	AC1	B	283	301	Right-handed alpha
Helix 20	AC2	B	306	333	Right-handed alpha
Helix 21	AC3	B	337	341	Right-handed 310
Helix 22	AC4	C	17	39	Right-handed alpha
Helix 23	AC5	C	41	45	Right-handed 310
Helix 24	AC6	C	46	54	Right-handed alpha
Helix 25	AC7	C	55	90	Right-handed alpha
Helix 26	AC8	C	91	92	Right-handed 310
Helix 27	AC9	C	93	94	Right-handed 310
Helix 28	AD1	C	95	100	Right-handed alpha
Helix 29	AD2	C	100	123	Right-handed alpha
Helix 30	AD3	C	129	133	Right-handed 310
Helix 31	AD4	C	135	175	Right-handed alpha
Helix 32	AD5	C	179	206	Right-handed alpha
Helix 33	AD6	D	14	48	Right-handed alpha
Helix 34	AD7	D	52	56	Right-handed 310
Helix 35	AD8	D	60	84	Right-handed alpha
Helix 36	AD9	D	91	128	Right-handed alpha
Helix 37	AE1	D	129	132	Right-handed 310
Helix 38	AE2	D	133	163	Right-handed alpha
Helix 39	AE3	E	9	43	Right-handed alpha
Helix 40	AE4	E	44	45	Right-handed 310
Helix 41	AE5	E	46	48	Right-handed 310
Helix 42	AE6	E	49	54	Right-handed alpha
Helix 43	AE7	E	54	76	Right-handed alpha
Helix 44	AE8	E	83	122	Right-handed alpha
Helix 45	AE9	E	125	153	Right-handed alpha
Helix 46	AF1	F	9	43	Right-handed alpha
Helix 47	AF2	F	46	48	Right-handed 310
Helix 48	AF3	F	49	54	Right-handed alpha
Helix 49	AF4	F	54	76	Right-handed alpha
Helix 50	AF5	F	83	122	Right-handed alpha
Helix 51	AF6	F	125	153	Right-handed alpha
Helix 52	AF7	G	8	44	Right-handed alpha
Helix 53	AF8	G	46	48	Right-handed 310
Helix 54	AF9	G	49	54	Right-handed alpha
Helix 55	AG1	G	54	76	Right-handed alpha
Helix 56	AG2	G	83	120	Right-handed alpha
Helix 57	AG3	G	121	124	Right-handed 310
Helix 58	AG4	G	125	153	Right-handed alpha
Helix 59	AG5	H	9	44	Right-handed alpha
Helix 60	AG6	H	46	48	Right-handed 310
Helix 61	AG7	H	49	54	Right-handed alpha
Helix 62	AG8	H	54	76	Right-handed alpha
Helix 63	AG9	H	83	122	Right-handed alpha
Helix 64	AH1	H	125	154	Right-handed alpha
Helix 65	AH2	I	8	44	Right-handed alpha
Helix 66	AH3	I	46	50	Right-handed 310
Helix 67	AH4	I	54	76	Right-handed alpha
Helix 68	AH5	I	83	120	Right-handed alpha
Helix 69	AH6	I	121	124	Right-handed 310
Helix 70	AH7	I	125	154	Right-handed alpha
Helix 71	AH8	J	9	43	Right-handed alpha
Helix 72	AH9	J	46	50	Right-handed 310
Helix 73	AI1	J	54	78	Right-handed alpha
Helix 74	AI2	J	83	119	Right-handed alpha
Helix 75	AI3	J	120	121	Right-handed 310
Helix 76	AI4	J	122	124	Right-handed 310
Helix 77	AI5	J	125	154	Right-handed alpha
Helix 78	AI6	K	8	44	Right-handed alpha
Helix 79	AI7	K	46	50	Right-handed 310
Helix 80	AI8	K	54	76	Right-handed alpha
Helix 81	AI9	K	83	122	Right-handed alpha
Helix 82	AJ1	K	124	153	Right-handed alpha
Helix 83	AJ2	M	3	25	Right-handed alpha
Helix 84	AJ3	M	29	54	Right-handed alpha
Helix 85	AJ4	N	220	245	Right-handed alpha
Helix 86	AJ5	N	250	255	Right-handed alpha
Helix 87	AJ6	O	8	33	Right-handed alpha
Helix 88	AJ7	O	35	40	Right-handed alpha
Helix 89	AJ8	O	47	75	Right-handed alpha
Helix 90	AJ9	Q	30	32	Right-handed 310
Helix 91	AK1	Q	64	67	Right-handed 310
Helix 92	AK2	Q	76	78	Right-handed 310
Helix 93	AK3	Q	89	93	Right-handed 310
Helix 94	AK4	Q	107	113	Right-handed alpha
Helix 95	AK5	R	30	32	Right-handed 310
Helix 96	AK6	R	63	68	Right-handed alpha
Helix 97	AK7	R	89	93	Right-handed 310
Helix 98	AK8	R	107	113	Right-handed alpha
Helix 99	AK9	S	30	32	Right-handed 310
Helix 100	AL1	S	64	67	Right-handed 310
Helix 101	AL2	S	89	93	Right-handed 310
Helix 102	AL3	S	107	113	Right-handed alpha
Helix 103	AL4	T	30	32	Right-handed 310
Helix 104	AL5	T	64	67	Right-handed 310
Helix 105	AL6	T	89	93	Right-handed 310
Helix 106	AL7	T	107	113	Right-handed alpha
Helix 107	AL8	L	9	44	Right-handed alpha
Helix 108	AL9	L	46	48	Right-handed 310
Helix 109	AM1	L	49	54	Right-handed alpha
Helix 110	AM2	L	54	76	Right-handed alpha
Helix 111	AM3	L	83	122	Right-handed alpha
Helix 112	AM4	L	124	153	Right-handed alpha
Helix 113	AM5	A	25	37	Right-handed alpha
Helix 114	AM6	A	49	53	Right-handed 310
Helix 115	AM7	A	55	79	Right-handed alpha
Helix 116	AM8	A	103	146	Right-handed alpha
Helix 117	AM9	A	148	153	Right-handed 310
Helix 118	AN1	A	195	207	Right-handed alpha
Helix 119	AN2	A	242	256	Right-handed alpha
Helix 120	AN3	A	266	304	Right-handed alpha
Helix 121	AN4	A	305	324	Right-handed alpha
Helix 122	AN5	A	345	361	Right-handed alpha
Helix 123	AN6	A	384	396	Right-handed alpha
Helix 124	AN7	A	407	423	Right-handed alpha
Helix 125	AN8	A	425	442	Right-handed alpha
Helix 126	AN9	A	442	449	Right-handed alpha
Helix 127	AO1	A	452	461	Right-handed alpha
Helix 128	AO2	A	461	479	Right-handed alpha
Helix 129	AO3	A	519	523	Right-handed 310
Helix 130	AO4	A	527	562	Right-handed alpha
Helix 131	AO5	A	564	571	Right-handed alpha
Helix 132	AO6	A	571	581	Right-handed alpha
Helix 133	AO7	A	582	596	Right-handed alpha
Helix 134	AO8	A	597	602	Right-handed alpha
Helix 135	AO9	A	607	618	Right-handed alpha
Helix 136	AP1	A	629	659	Right-handed alpha
Helix 137	AP2	A	707	733	Right-handed alpha
Helix 138	AP3	A	734	754	Right-handed alpha
Helix 139	AP4	A	754	759	Right-handed alpha
Helix 140	AP5	A	762	784	Right-handed alpha
Helix 141	AP6	A	787	803	Right-handed alpha
Helix 142	AP7	A	805	809	Right-handed 310

There are 18 sheets in PDB entry 9E76. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	63	64	first strand
Strand 2	A	506	507	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	5	9	first strand
Strand 2	Q	19	27	anti-parallel
Strand 3	Q	80	86	anti-parallel
Strand 4	Q	70	75	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	12	13	first strand
Strand 2	Q	123	126	parallel
Strand 3	Q	94	103	anti-parallel
Strand 4	Q	34	41	anti-parallel
Strand 5	Q	47	53	anti-parallel
Strand 6	Q	60	62	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	12	13	first strand
Strand 2	Q	123	126	parallel
Strand 3	Q	94	103	anti-parallel
Strand 4	Q	118	119	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	5	9	first strand
Strand 2	R	22	27	anti-parallel
Strand 3	R	80	83	anti-parallel
Strand 4	R	72	75	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	12	13	first strand
Strand 2	R	123	126	parallel
Strand 3	R	94	103	anti-parallel
Strand 4	R	34	41	anti-parallel
Strand 5	R	47	53	anti-parallel
Strand 6	R	60	62	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	12	13	first strand
Strand 2	R	123	126	parallel
Strand 3	R	94	103	anti-parallel
Strand 4	R	118	119	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	5	9	first strand
Strand 2	S	22	27	anti-parallel
Strand 3	S	80	83	anti-parallel
Strand 4	S	72	75	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	12	13	first strand
Strand 2	S	123	126	parallel
Strand 3	S	94	103	anti-parallel
Strand 4	S	34	41	anti-parallel
Strand 5	S	48	53	anti-parallel
Strand 6	S	60	62	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	12	13	first strand
Strand 2	S	123	126	parallel
Strand 3	S	94	103	anti-parallel
Strand 4	S	118	119	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	5	9	first strand
Strand 2	T	21	27	anti-parallel
Strand 3	T	80	85	anti-parallel
Strand 4	T	70	75	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	12	13	first strand
Strand 2	T	123	126	parallel
Strand 3	T	94	103	anti-parallel
Strand 4	T	34	41	anti-parallel
Strand 5	T	48	53	anti-parallel
Strand 6	T	60	62	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	12	13	first strand
Strand 2	T	123	126	parallel
Strand 3	T	94	103	anti-parallel
Strand 4	T	118	119	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	334	342	anti-parallel
Strand 3	A	327	329	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	334	342	anti-parallel
Strand 3	A	14	22	anti-parallel
Strand 4	A	368	371	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	217	first strand
Strand 2	A	233	239	anti-parallel
Strand 3	A	186	192	anti-parallel
Strand 4	A	259	261	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	224	first strand
Strand 2	A	229	231	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	495	first strand
Strand 2	A	509	510	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E76

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E76