Analysis of interatomic Contacts of Structural Units in PDB entry:
9E77

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E77 entry

There are 9 chains in PDB entry 9E77 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PRO 231	ALA 443
H	PHE 11	ASN 209
A	VAL 37	PRO 469
C	SER 3	LYS 406
D	VAL 141	GLN 406
E	SER 24	ILE 333
F	SER 38	GLN 316
G	ASN 10	ALA 222
I	MET 1	GLY 76

There are114 helices in PDB entry 9E77. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	231	248	Right-handed alpha
Helix 2	AA2	B	250	268	Right-handed alpha
Helix 3	AA3	B	269	271	Right-handed 310
Helix 4	AA4	B	272	288	Right-handed alpha
Helix 5	AA5	B	298	304	Right-handed alpha
Helix 6	AA6	B	309	321	Right-handed alpha
Helix 7	AA7	B	322	333	Right-handed alpha
Helix 8	AA8	B	340	345	Right-handed alpha
Helix 9	AA9	B	346	363	Right-handed alpha
Helix 10	AB1	B	371	379	Right-handed alpha
Helix 11	AB2	B	381	395	Right-handed alpha
Helix 12	AB3	B	417	442	Right-handed alpha
Helix 13	AB4	H	13	27	Right-handed alpha
Helix 14	AB5	H	33	47	Right-handed alpha
Helix 15	AB6	H	49	60	Right-handed alpha
Helix 16	AB7	H	61	68	Right-handed alpha
Helix 17	AB8	H	69	83	Right-handed alpha
Helix 18	AB9	H	85	94	Right-handed alpha
Helix 19	AC1	H	102	124	Right-handed alpha
Helix 20	AC2	H	130	138	Right-handed alpha
Helix 21	AC3	H	140	150	Right-handed alpha
Helix 22	AC4	H	195	209	Right-handed alpha
Helix 23	AC5	A	43	51	Right-handed alpha
Helix 24	AC6	A	54	67	Right-handed alpha
Helix 25	AC7	A	70	82	Right-handed alpha
Helix 26	AC8	A	83	87	Right-handed 310
Helix 27	AC9	A	88	102	Right-handed alpha
Helix 28	AD1	A	127	156	Right-handed alpha
Helix 29	AD2	A	157	176	Right-handed alpha
Helix 30	AD3	A	178	189	Right-handed alpha
Helix 31	AD4	A	190	192	Right-handed 310
Helix 32	AD5	A	194	213	Right-handed alpha
Helix 33	AD6	A	214	228	Right-handed alpha
Helix 34	AD7	A	229	234	Right-handed alpha
Helix 35	AD8	A	245	260	Right-handed alpha
Helix 36	AD9	A	262	271	Right-handed alpha
Helix 37	AE1	A	272	273	Right-handed 310
Helix 38	AE2	A	274	278	Right-handed 310
Helix 39	AE3	A	285	301	Right-handed alpha
Helix 40	AE4	A	302	310	Right-handed alpha
Helix 41	AE5	A	316	321	Right-handed alpha
Helix 42	AE6	A	323	335	Right-handed alpha
Helix 43	AE7	A	337	353	Right-handed alpha
Helix 44	AE8	A	361	378	Right-handed alpha
Helix 45	AE9	A	386	393	Right-handed alpha
Helix 46	AF1	A	396	411	Right-handed alpha
Helix 47	AF2	A	430	463	Right-handed alpha
Helix 48	AF3	C	4	16	Right-handed alpha
Helix 49	AF4	C	20	30	Right-handed alpha
Helix 50	AF5	C	38	44	Right-handed alpha
Helix 51	AF6	C	55	64	Right-handed alpha
Helix 52	AF7	C	70	72	Right-handed 310
Helix 53	AF8	C	73	88	Right-handed alpha
Helix 54	AF9	C	92	97	Right-handed 310
Helix 55	AG1	C	98	115	Right-handed alpha
Helix 56	AG2	C	122	130	Right-handed alpha
Helix 57	AG3	C	139	152	Right-handed alpha
Helix 58	AG4	C	158	163	Right-handed alpha
Helix 59	AG5	C	177	195	Right-handed alpha
Helix 60	AG6	C	197	210	Right-handed alpha
Helix 61	AG7	C	217	235	Right-handed alpha
Helix 62	AG8	C	252	257	Right-handed alpha
Helix 63	AG9	C	258	267	Right-handed alpha
Helix 64	AH1	C	271	282	Right-handed alpha
Helix 65	AH2	C	282	289	Right-handed alpha
Helix 66	AH3	C	294	310	Right-handed alpha
Helix 67	AH4	C	319	323	Right-handed alpha
Helix 68	AH5	C	330	344	Right-handed alpha
Helix 69	AH6	C	369	399	Right-handed alpha
Helix 70	AH7	C	401	406	Right-handed alpha
Helix 71	AH8	D	142	158	Right-handed alpha
Helix 72	AH9	D	160	173	Right-handed alpha
Helix 73	AI1	D	183	198	Right-handed alpha
Helix 74	AI2	D	201	212	Right-handed alpha
Helix 75	AI3	D	218	236	Right-handed alpha
Helix 76	AI4	D	239	252	Right-handed alpha
Helix 77	AI5	D	253	258	Right-handed 310
Helix 78	AI6	D	260	270	Right-handed alpha
Helix 79	AI7	D	274	285	Right-handed alpha
Helix 80	AI8	D	298	313	Right-handed alpha
Helix 81	AI9	D	321	329	Right-handed alpha
Helix 82	AJ1	D	331	345	Right-handed alpha
Helix 83	AJ2	D	365	390	Right-handed alpha
Helix 84	AJ3	D	392	406	Right-handed alpha
Helix 85	AJ4	E	24	30	Right-handed 310
Helix 86	AJ5	E	32	42	Right-handed alpha
Helix 87	AJ6	E	59	73	Right-handed alpha
Helix 88	AJ7	E	111	126	Right-handed alpha
Helix 89	AJ8	E	148	162	Right-handed alpha
Helix 90	AJ9	E	171	179	Right-handed alpha
Helix 91	AK1	E	207	209	Right-handed 310
Helix 92	AK2	E	210	217	Right-handed alpha
Helix 93	AK3	E	231	251	Right-handed alpha
Helix 94	AK4	E	253	258	Right-handed alpha
Helix 95	AK5	E	259	282	Right-handed alpha
Helix 96	AK6	E	298	329	Right-handed alpha
Helix 97	AK7	F	44	63	Right-handed alpha
Helix 98	AK8	F	101	116	Right-handed alpha
Helix 99	AK9	F	132	143	Right-handed alpha
Helix 100	AL1	F	193	206	Right-handed alpha
Helix 101	AL2	F	216	248	Right-handed alpha
Helix 102	AL3	F	253	265	Right-handed alpha
Helix 103	AL4	F	272	313	Right-handed alpha
Helix 104	AL5	G	11	18	Right-handed alpha
Helix 105	AL6	G	24	37	Right-handed alpha
Helix 106	AL7	G	44	49	Right-handed alpha
Helix 107	AL8	G	49	55	Right-handed alpha
Helix 108	AL9	G	60	72	Right-handed alpha
Helix 109	AM1	G	74	81	Right-handed alpha
Helix 110	AM2	G	89	108	Right-handed alpha
Helix 111	AM3	G	113	121	Right-handed alpha
Helix 112	AM4	G	124	138	Right-handed alpha
Helix 113	AM5	G	166	222	Right-handed alpha
Helix 114	AM6	I	22	34	Right-handed alpha

There are 8 sheets in PDB entry 9E77. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	370	first strand
Strand 2	B	408	411	anti-parallel
Strand 3	B	400	403	anti-parallel
Strand 4	A	381	385	parallel
Strand 5	A	423	426	anti-parallel
Strand 6	A	415	418	anti-parallel
Strand 7	C	314	318	parallel
Strand 8	C	357	360	anti-parallel
Strand 9	C	349	352	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	129	first strand
Strand 2	H	161	162	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	168	169	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	353	first strand
Strand 2	D	358	360	anti-parallel
Strand 3	D	316	320	anti-parallel
Strand 4	G	141	146	parallel
Strand 5	G	151	157	anti-parallel
Strand 6	G	110	112	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	221	223	first strand
Strand 2	E	183	188	anti-parallel
Strand 3	E	166	170	anti-parallel
Strand 4	E	132	139	parallel
Strand 5	E	78	86	anti-parallel
Strand 6	E	89	97	anti-parallel
Strand 7	E	54	58	parallel
Strand 8	E	225	229	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	186	first strand
Strand 2	F	166	175	anti-parallel
Strand 3	F	150	154	anti-parallel
Strand 4	F	120	127	parallel
Strand 5	F	69	77	anti-parallel
Strand 6	F	80	88	anti-parallel
Strand 7	F	40	43	parallel
Strand 8	F	188	190	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	97	100	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	13	first strand
Strand 2	I	5	7	anti-parallel
Strand 3	I	68	70	parallel
Strand 4	I	42	45	anti-parallel
Strand 5	I	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E77

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E77