Analysis of interatomic Contacts of Structural Units in PDB entry:
9E7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9E7P entry

There are 2 chains in PDB entry 9E7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1VAL 125
B
 LYS 2832PRO 3110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 9E7P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 30Right-handed 310
Helix 2
AA2
A
87 91Right-handed 310
Helix 3
AA3
A
110 114Right-handed 310
Helix 4
AA4
B
2849 2853Right-handed 310
Helix 5
AA5
B
2911 2915Right-handed alpha
Helix 6
AA6
B
3050 3055Right-handed alpha
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There are 10 sheets in PDB entry 9E7P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
17 25anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
A
68 73anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
32 38anti-parallel
Strand 4
A
92 100anti-parallel
Strand 5
A
116 117anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
32 38anti-parallel
Strand 4
A
92 100anti-parallel
Strand 5
A
121 123anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
B
2963 2966anti-parallel
Strand 3
B
2957 2960anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2835 2838first strand
Strand 2
B
2843 2847anti-parallel
Strand 3
B
2874 2880parallel
Strand 4
B
2930 2936anti-parallel
Strand 5
B
2919 2925anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2862 2869first strand
Strand 2
B
2969 2976parallel
Strand 3
B
2945 2952anti-parallel
Strand 4
B
2891 2893anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2862 2869first strand
Strand 2
B
2969 2976parallel
Strand 3
B
2945 2952anti-parallel
Strand 4
B
2900 2903anti-parallel
Strand 5
B
2907 2910anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2996 2999first strand
Strand 2
B
2983 2987parallel
Strand 3
B
3019 3025parallel
Strand 4
B
3070 3077anti-parallel
Strand 5
B
3058 3063anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3009 3014first strand
Strand 2
B
3096 3103parallel
Strand 3
B
3084 3091anti-parallel
Strand 4
B
3029 3031anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3040 3041first strand
Strand 2
B
3047 3048anti-parallel
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