Analysis of interatomic Contacts of Structural Units in PDB entry:
9E81


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9E81 entry

There are 4 chains in PDB entry 9E81 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 37LYS 467
B
 PRO 231ALA 443
C
 SER 3LYS 406
D
 VAL 141THR 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are111 helices in PDB entry 9E81. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 51Right-handed alpha
Helix 2
AA2
A
54 66Right-handed alpha
Helix 3
AA3
A
70 82Right-handed alpha
Helix 4
AA4
A
88 102Right-handed alpha
Helix 5
AA5
A
127 156Right-handed alpha
Helix 6
AA6
A
157 176Right-handed alpha
Helix 7
AA7
A
178 190Right-handed alpha
Helix 8
AA8
A
194 213Right-handed alpha
Helix 9
AA9
A
214 228Right-handed alpha
Helix 10
AB1
A
229 234Right-handed alpha
Helix 11
AB2
A
244 260Right-handed alpha
Helix 12
AB3
A
262 271Right-handed alpha
Helix 13
AB4
A
274 278Right-handed 310
Helix 14
AB5
A
285 301Right-handed alpha
Helix 15
AB6
A
302 310Right-handed alpha
Helix 16
AB7
A
316 323Right-handed alpha
Helix 17
AB8
A
323 335Right-handed alpha
Helix 18
AB9
A
337 353Right-handed alpha
Helix 19
AC1
A
358 360Right-handed 310
Helix 20
AC2
A
361 379Right-handed alpha
Helix 21
AC3
A
386 393Right-handed alpha
Helix 22
AC4
A
396 411Right-handed alpha
Helix 23
AC5
A
430 463Right-handed alpha
Helix 24
AC6
B
232 247Right-handed alpha
Helix 25
AC7
B
250 266Right-handed alpha
Helix 26
AC8
B
269 288Right-handed alpha
Helix 27
AC9
B
299 304Right-handed alpha
Helix 28
AD1
B
309 321Right-handed alpha
Helix 29
AD2
B
322 333Right-handed alpha
Helix 30
AD3
B
340 363Right-handed alpha
Helix 31
AD4
B
371 379Right-handed alpha
Helix 32
AD5
B
381 395Right-handed alpha
Helix 33
AD6
B
418 442Right-handed alpha
Helix 34
AD7
C
4 16Right-handed alpha
Helix 35
AD8
C
20 30Right-handed alpha
Helix 36
AD9
C
38 44Right-handed alpha
Helix 37
AE1
C
55 65Right-handed alpha
Helix 38
AE2
C
70 72Right-handed 310
Helix 39
AE3
C
73 88Right-handed alpha
Helix 40
AE4
C
93 97Right-handed 310
Helix 41
AE5
C
98 115Right-handed alpha
Helix 42
AE6
C
122 127Right-handed alpha
Helix 43
AE7
C
141 152Right-handed alpha
Helix 44
AE8
C
158 163Right-handed alpha
Helix 45
AE9
C
177 195Right-handed alpha
Helix 46
AF1
C
197 210Right-handed alpha
Helix 47
AF2
C
220 235Right-handed alpha
Helix 48
AF3
C
252 257Right-handed alpha
Helix 49
AF4
C
258 267Right-handed alpha
Helix 50
AF5
C
271 282Right-handed alpha
Helix 51
AF6
C
282 289Right-handed alpha
Helix 52
AF7
C
294 311Right-handed alpha
Helix 53
AF8
C
319 326Right-handed alpha
Helix 54
AF9
C
330 344Right-handed alpha
Helix 55
AG1
C
369 399Right-handed alpha
Helix 56
AG2
C
400 404Right-handed 310
Helix 57
AG3
D
142 158Right-handed alpha
Helix 58
AG4
D
160 176Right-handed alpha
Helix 59
AG5
D
186 198Right-handed alpha
Helix 60
AG6
D
200 212Right-handed alpha
Helix 61
AG7
D
218 235Right-handed alpha
Helix 62
AG8
D
239 251Right-handed alpha
Helix 63
AG9
D
253 258Right-handed 310
Helix 64
AH1
D
260 269Right-handed alpha
Helix 65
AH2
D
274 285Right-handed alpha
Helix 66
AH3
D
286 290Right-handed 310
Helix 67
AH4
D
298 313Right-handed alpha
Helix 68
AH5
D
321 328Right-handed alpha
Helix 69
AH6
D
331 345Right-handed alpha
Helix 70
AH7
D
365 392Right-handed alpha
Helix 71
AH8
D
394 406Right-handed alpha
Helix 72
AH9
E
24 30Right-handed 310
Helix 73
AI1
E
32 42Right-handed alpha
Helix 74
AI2
E
59 73Right-handed alpha
Helix 75
AI3
E
111 126Right-handed alpha
Helix 76
AI4
E
148 162Right-handed alpha
Helix 77
AI5
E
171 179Right-handed alpha
Helix 78
AI6
E
207 209Right-handed 310
Helix 79
AI7
E
210 217Right-handed alpha
Helix 80
AI8
E
231 251Right-handed alpha
Helix 81
AI9
E
253 258Right-handed alpha
Helix 82
AJ1
E
259 282Right-handed alpha
Helix 83
AJ2
E
298 329Right-handed alpha
Helix 84
AJ3
F
44 63Right-handed alpha
Helix 85
AJ4
F
101 116Right-handed alpha
Helix 86
AJ5
F
132 144Right-handed alpha
Helix 87
AJ6
F
193 206Right-handed alpha
Helix 88
AJ7
F
216 221Right-handed alpha
Helix 89
AJ8
F
222 248Right-handed alpha
Helix 90
AJ9
F
253 266Right-handed alpha
Helix 91
AK1
F
272 313Right-handed alpha
Helix 92
AK2
G
11 19Right-handed alpha
Helix 93
AK3
G
24 37Right-handed alpha
Helix 94
AK4
G
49 54Right-handed alpha
Helix 95
AK5
G
55 57Right-handed 310
Helix 96
AK6
G
60 73Right-handed alpha
Helix 97
AK7
G
76 81Right-handed alpha
Helix 98
AK8
G
89 108Right-handed alpha
Helix 99
AK9
G
113 121Right-handed alpha
Helix 100
AL1
G
124 138Right-handed alpha
Helix 101
AL2
G
166 221Right-handed alpha
Helix 102
AL3
H
12 27Right-handed alpha
Helix 103
AL4
H
33 47Right-handed alpha
Helix 104
AL5
H
49 60Right-handed alpha
Helix 105
AL6
H
61 68Right-handed alpha
Helix 106
AL7
H
69 83Right-handed alpha
Helix 107
AL8
H
85 94Right-handed alpha
Helix 108
AL9
H
102 124Right-handed alpha
Helix 109
AM1
H
130 138Right-handed alpha
Helix 110
AM2
H
140 148Right-handed alpha
Helix 111
AM3
H
195 208Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9E81. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
110 112first strand
Strand 2
G
151 157anti-parallel
Strand 3
G
141 146anti-parallel
Strand 4
D
316 320parallel
Strand 5
D
358 360anti-parallel
Strand 6
D
351 353anti-parallel
Strand 7
B
366 370parallel
Strand 8
B
408 411anti-parallel
Strand 9
B
400 403anti-parallel
Strand 10
A
381 385parallel
Strand 11
A
423 426anti-parallel
Strand 12
A
415 418anti-parallel
Strand 13
C
314 318parallel
Strand 14
C
357 360anti-parallel
Strand 15
C
349 352anti-parallel
Strand 16
H
125 129parallel
Strand 17
H
161 162anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 138first strand
Strand 2
C
168 169parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
54 58first strand
Strand 2
E
89 97parallel
Strand 3
E
78 86anti-parallel
Strand 4
E
132 139anti-parallel
Strand 5
E
167 170parallel
Strand 6
E
183 188anti-parallel
Strand 7
E
221 229anti-parallel
Strand 8
E
54 58parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
178 186first strand
Strand 2
F
166 175anti-parallel
Strand 3
F
150 154anti-parallel
Strand 4
F
120 127parallel
Strand 5
F
70 77anti-parallel
Strand 6
F
80 88anti-parallel
Strand 7
F
40 43parallel
Strand 8
F
188 190parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
91 94first strand
Strand 2
F
97 100anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il