Analysis of interatomic Contacts of Structural Units in PDB entry:
9E82

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E82 entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 9E82 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	LYS 357
B	LEU 0	PHE 13
H	GLU 4	GLU 231
L	ASP 2	ARG 212
R	CYS 34	LYS 337
R	GLY 339	LEU 340
R	LYS 342	LEU 343

There are 19 helices in PDB entry 9E82. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	109	Right-handed alpha
Helix 2	AA2	A	277	281	Right-handed 310
Helix 3	AA3	H	31	33	Right-handed 310
Helix 4	AA4	H	65	68	Right-handed 310
Helix 5	AA5	H	90	94	Right-handed 310
Helix 6	AA6	H	204	208	Right-handed 310
Helix 7	AA7	L	122	129	Right-handed alpha
Helix 8	AA8	L	184	188	Right-handed alpha
Helix 9	AA9	R	39	70	Right-handed alpha
Helix 10	AB1	R	81	106	Right-handed alpha
Helix 11	AB2	R	113	146	Right-handed alpha
Helix 12	AB3	R	158	182	Right-handed alpha
Helix 13	AB4	R	201	205	Right-handed 310
Helix 14	AB5	R	207	207	Right-handed 310
Helix 15	AB6	R	208	219	Right-handed alpha
Helix 16	AB7	R	221	239	Right-handed alpha
Helix 17	AB8	R	252	280	Right-handed alpha
Helix 18	AB9	R	286	311	Right-handed alpha
Helix 19	AC1	R	312	314	Right-handed 310

There are 19 sheets in PDB entry 9E82. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	116	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	18	21	anti-parallel
Strand 4	A	7	12	anti-parallel
Strand 5	R	339	342	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	163	171	parallel
Strand 3	A	141	150	anti-parallel
Strand 4	A	53	62	anti-parallel
Strand 5	A	78	87	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	288	290	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	188	first strand
Strand 2	A	197	201	anti-parallel
Strand 3	A	214	222	anti-parallel
Strand 4	A	266	274	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	351	352	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	251	first strand
Strand 2	A	237	242	anti-parallel
Strand 3	A	316	329	anti-parallel
Strand 4	A	228	234	anti-parallel
Strand 5	A	255	258	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	251	first strand
Strand 2	A	237	242	anti-parallel
Strand 3	A	316	329	anti-parallel
Strand 4	A	343	349	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	21	28	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	74	76	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	50	55	anti-parallel
Strand 3	H	35	42	anti-parallel
Strand 4	H	95	103	anti-parallel
Strand 5	H	121	122	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	50	55	anti-parallel
Strand 3	H	35	42	anti-parallel
Strand 4	H	95	103	anti-parallel
Strand 5	H	127	128	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	143	first strand
Strand 2	H	155	164	anti-parallel
Strand 3	H	195	203	anti-parallel
Strand 4	H	183	184	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	170	173	first strand
Strand 2	H	213	219	anti-parallel
Strand 3	H	224	230	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	104	106	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	25	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	63	66	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	34	36	first strand
Strand 2	L	89	91	anti-parallel
Strand 3	L	98	99	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	49	50	first strand
Strand 2	L	54	55	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	130	140	anti-parallel
Strand 3	L	174	183	anti-parallel
Strand 4	L	160	161	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	150	first strand
Strand 2	L	192	199	anti-parallel
Strand 3	L	206	211	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	183	187	first strand
Strand 2	R	194	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E82

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E82