Analysis of interatomic Contacts of Structural Units in PDB entry:
9E84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E84 entry

There are 11 chains in PDB entry 9E84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	GLU 224
B	SER 4	GLU 230
C	SER 28	SER 1140
D	ASN 5	ALA 1282
E	GLY 27	GLY 109
F	GLU 206	GLN 461
J	LEU 24	GLY 111
M	ILE 2	ALA 160
N	A 39	T 87
R	A 1	G 6
T	A 5	T 53

There are117 helices in PDB entry 9E84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	45	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	203	224	Right-handed alpha
Helix 4	AA4	B	29	45	Right-handed alpha
Helix 5	AA5	B	72	83	Right-handed alpha
Helix 6	AA6	B	108	110	Right-handed 310
Helix 7	AA7	B	203	224	Right-handed alpha
Helix 8	AA8	C	54	66	Right-handed alpha
Helix 9	AA9	C	67	77	Right-handed alpha
Helix 10	AB1	C	84	94	Right-handed alpha
Helix 11	AB2	C	118	125	Right-handed alpha
Helix 12	AB3	C	233	241	Right-handed alpha
Helix 13	AB4	C	244	252	Right-handed alpha
Helix 14	AB5	C	255	265	Right-handed alpha
Helix 15	AB6	C	269	282	Right-handed alpha
Helix 16	AB7	C	288	301	Right-handed alpha
Helix 17	AB8	C	309	321	Right-handed alpha
Helix 18	AB9	C	334	351	Right-handed alpha
Helix 19	AC1	C	380	407	Right-handed alpha
Helix 20	AC2	C	413	418	Right-handed alpha
Helix 21	AC3	C	420	432	Right-handed alpha
Helix 22	AC4	C	445	452	Right-handed alpha
Helix 23	AC5	C	469	474	Right-handed alpha
Helix 24	AC6	C	476	480	Right-handed 310
Helix 25	AC7	C	532	539	Right-handed alpha
Helix 26	AC8	C	574	576	Right-handed 310
Helix 27	AC9	C	590	594	Right-handed 310
Helix 28	AD1	C	596	600	Right-handed 310
Helix 29	AD2	C	601	612	Right-handed alpha
Helix 30	AD3	C	629	639	Right-handed alpha
Helix 31	AD4	C	739	744	Right-handed alpha
Helix 32	AD5	C	777	781	Right-handed 310
Helix 33	AD6	C	856	858	Right-handed 310
Helix 34	AD7	C	928	943	Right-handed alpha
Helix 35	AD8	C	953	957	Right-handed 310
Helix 36	AD9	C	981	991	Right-handed alpha
Helix 37	AE1	C	1036	1040	Right-handed 310
Helix 38	AE2	C	1069	1080	Right-handed alpha
Helix 39	AE3	C	1081	1090	Right-handed alpha
Helix 40	AE4	C	1095	1109	Right-handed alpha
Helix 41	AE5	C	1118	1130	Right-handed alpha
Helix 42	AE6	D	16	24	Right-handed alpha
Helix 43	AE7	D	84	90	Right-handed 310
Helix 44	AE8	D	103	109	Right-handed alpha
Helix 45	AE9	D	112	119	Right-handed alpha
Helix 46	AF1	D	121	130	Right-handed alpha
Helix 47	AF2	D	141	143	Right-handed 310
Helix 48	AF3	D	144	186	Right-handed alpha
Helix 49	AF4	D	190	228	Right-handed alpha
Helix 50	AF5	D	237	249	Right-handed alpha
Helix 51	AF6	D	256	267	Right-handed alpha
Helix 52	AF7	D	269	284	Right-handed alpha
Helix 53	AF8	D	286	305	Right-handed alpha
Helix 54	AF9	D	308	311	Right-handed 310
Helix 55	AG1	D	339	361	Right-handed alpha
Helix 56	AG2	D	363	383	Right-handed alpha
Helix 57	AG3	D	402	406	Right-handed 310
Helix 58	AG4	D	411	417	Right-handed alpha
Helix 59	AG5	D	445	452	Right-handed alpha
Helix 60	AG6	D	452	462	Right-handed alpha
Helix 61	AG7	D	468	479	Right-handed alpha
Helix 62	AG8	D	480	491	Right-handed alpha
Helix 63	AG9	D	505	507	Right-handed 310
Helix 64	AH1	D	525	527	Right-handed 310
Helix 65	AH2	D	528	533	Right-handed alpha
Helix 66	AH3	D	548	558	Right-handed alpha
Helix 67	AH4	D	579	590	Right-handed alpha
Helix 68	AH5	D	614	624	Right-handed alpha
Helix 69	AH6	D	643	651	Right-handed alpha
Helix 70	AH7	D	668	677	Right-handed alpha
Helix 71	AH8	D	689	704	Right-handed alpha
Helix 72	AH9	D	705	727	Right-handed alpha
Helix 73	AI1	D	732	736	Right-handed 310
Helix 74	AI2	D	741	762	Right-handed alpha
Helix 75	AI3	D	766	793	Right-handed alpha
Helix 76	AI4	D	797	805	Right-handed alpha
Helix 77	AI5	D	810	818	Right-handed alpha
Helix 78	AI6	D	845	881	Right-handed alpha
Helix 79	AI7	D	945	956	Right-handed alpha
Helix 80	AI8	D	975	980	Right-handed alpha
Helix 81	AI9	D	994	1005	Right-handed alpha
Helix 82	AJ1	D	1027	1037	Right-handed alpha
Helix 83	AJ2	D	1117	1126	Right-handed alpha
Helix 84	AJ3	D	1126	1144	Right-handed alpha
Helix 85	AJ4	D	1150	1162	Right-handed alpha
Helix 86	AJ5	D	1183	1195	Right-handed alpha
Helix 87	AJ6	D	1209	1216	Right-handed alpha
Helix 88	AJ7	D	1219	1227	Right-handed alpha
Helix 89	AJ8	D	1228	1240	Right-handed alpha
Helix 90	AJ9	D	1247	1254	Right-handed alpha
Helix 91	AK1	D	1260	1263	Right-handed 310
Helix 92	AK2	D	1264	1269	Right-handed alpha
Helix 93	AK3	D	1275	1282	Right-handed alpha
Helix 94	AK4	E	33	37	Right-handed 310
Helix 95	AK5	E	39	45	Right-handed alpha
Helix 96	AK6	E	49	71	Right-handed alpha
Helix 97	AK7	E	90	102	Right-handed alpha
Helix 98	AK8	F	210	221	Right-handed alpha
Helix 99	AK9	F	226	238	Right-handed alpha
Helix 100	AL1	F	242	267	Right-handed alpha
Helix 101	AL2	F	274	308	Right-handed alpha
Helix 102	AL3	F	316	334	Right-handed alpha
Helix 103	AL4	F	342	363	Right-handed alpha
Helix 104	AL5	F	369	391	Right-handed alpha
Helix 105	AL6	F	395	404	Right-handed alpha
Helix 106	AL7	F	408	418	Right-handed alpha
Helix 107	AL8	F	435	439	Right-handed 310
Helix 108	AL9	F	448	461	Right-handed alpha
Helix 109	AM1	J	80	89	Right-handed alpha
Helix 110	AM2	J	90	110	Right-handed alpha
Helix 111	AM3	M	26	30	Right-handed 310
Helix 112	AM4	M	52	57	Right-handed alpha
Helix 113	AM5	M	63	76	Right-handed alpha
Helix 114	AM6	M	85	98	Right-handed alpha
Helix 115	AM7	M	101	118	Right-handed alpha
Helix 116	AM8	M	122	144	Right-handed alpha
Helix 117	AM9	M	146	160	Right-handed alpha

There are 43 sheets in PDB entry 9E84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	178	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	93	100	anti-parallel
Strand 3	A	133	143	anti-parallel
Strand 4	A	48	56	anti-parallel
Strand 5	A	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	117	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	166	168	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	15	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	171	179	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	143	anti-parallel
Strand 3	B	48	56	anti-parallel
Strand 4	B	162	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	972	973	parallel
Strand 3	C	626	627	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	146	158	anti-parallel
Strand 5	M	45	49	anti-parallel
Strand 6	M	32	38	anti-parallel
Strand 7	M	15	25	anti-parallel
Strand 8	M	8	11	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	497	499	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	192	first strand
Strand 2	C	197	205	anti-parallel
Strand 3	C	212	214	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	519	anti-parallel
Strand 3	C	524	531	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	568	572	first strand
Strand 2	C	558	562	anti-parallel
Strand 3	C	541	542	anti-parallel
Strand 4	C	578	579	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	671	first strand
Strand 2	C	657	662	anti-parallel
Strand 3	C	648	653	anti-parallel
Strand 4	C	695	696	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	687	688	first strand
Strand 2	C	703	704	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1007	1008	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	884	886	anti-parallel
Strand 4	C	893	899	anti-parallel
Strand 5	C	735	738	parallel
Strand 6	C	915	916	anti-parallel
Strand 7	C	717	722	parallel
Strand 8	C	1023	1032	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	748	752	first strand
Strand 2	C	865	878	anti-parallel
Strand 3	C	755	762	anti-parallel
Strand 4	C	765	766	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	748	752	first strand
Strand 2	C	865	878	anti-parallel
Strand 3	C	844	854	anti-parallel
Strand 4	C	796	797	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	803	first strand
Strand 2	C	837	838	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	806	808	first strand
Strand 2	C	832	834	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	944	945	first strand
Strand 2	C	965	966	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	522	524	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1068	first strand
Strand 2	D	420	422	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1136	1138	first strand
Strand 2	D	9	11	anti-parallel
Strand 3	D	1242	1243	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	330	first strand
Strand 2	D	334	337	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	393	first strand
Strand 2	D	397	398	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	632	637	parallel
Strand 3	D	662	667	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	822	825	first strand
Strand 2	D	831	836	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	898	899	first strand
Strand 2	D	960	963	anti-parallel
Strand 3	D	923	925	anti-parallel
Strand 4	D	943	944	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1053	1056	first strand
Strand 2	D	1063	1066	anti-parallel
Strand 3	D	1075	1077	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1180	1182	first strand
Strand 2	D	1164	1167	anti-parallel
Strand 3	D	1203	1205	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1271	1274	first strand
Strand 2	E	104	107	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	33	first strand
Strand 2	J	39	45	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	55	first strand
Strand 2	J	61	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E84

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E84