Analysis of interatomic Contacts of Structural Units in PDB entry:
9E85

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E85 entry

There are 11 chains in PDB entry 9E85 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	ASN 226
B	MET 1	GLY 235
C	SER 31	SER 1140
D	LEU 2	ALA 1282
E	GLY 28	GLY 109
F	GLU 210	LEU 527
J	VAL 5	GLY 111
M	ILE 2	ALA 160
N	G 28	G 84
R	A 1	G 6
T	C 8	C 64

There are124 helices in PDB entry 9E85. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	46	Right-handed alpha
Helix 2	AA2	A	72	82	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	203	225	Right-handed alpha
Helix 5	AA5	B	29	44	Right-handed alpha
Helix 6	AA6	B	72	82	Right-handed alpha
Helix 7	AA7	B	108	110	Right-handed 310
Helix 8	AA8	B	203	226	Right-handed alpha
Helix 9	AA9	C	54	66	Right-handed alpha
Helix 10	AB1	C	67	77	Right-handed alpha
Helix 11	AB2	C	84	94	Right-handed alpha
Helix 12	AB3	C	118	126	Right-handed alpha
Helix 13	AB4	C	225	229	Right-handed 310
Helix 14	AB5	C	234	241	Right-handed alpha
Helix 15	AB6	C	244	252	Right-handed alpha
Helix 16	AB7	C	255	266	Right-handed alpha
Helix 17	AB8	C	269	282	Right-handed alpha
Helix 18	AB9	C	289	301	Right-handed alpha
Helix 19	AC1	C	308	321	Right-handed alpha
Helix 20	AC2	C	334	351	Right-handed alpha
Helix 21	AC3	C	380	406	Right-handed alpha
Helix 22	AC4	C	413	418	Right-handed alpha
Helix 23	AC5	C	420	432	Right-handed alpha
Helix 24	AC6	C	444	452	Right-handed alpha
Helix 25	AC7	C	476	480	Right-handed 310
Helix 26	AC8	C	532	538	Right-handed alpha
Helix 27	AC9	C	590	594	Right-handed 310
Helix 28	AD1	C	596	600	Right-handed 310
Helix 29	AD2	C	601	613	Right-handed alpha
Helix 30	AD3	C	629	639	Right-handed alpha
Helix 31	AD4	C	739	744	Right-handed alpha
Helix 32	AD5	C	815	826	Right-handed alpha
Helix 33	AD6	C	918	920	Right-handed 310
Helix 34	AD7	C	921	926	Right-handed alpha
Helix 35	AD8	C	928	943	Right-handed alpha
Helix 36	AD9	C	953	957	Right-handed 310
Helix 37	AE1	C	981	991	Right-handed alpha
Helix 38	AE2	C	1036	1041	Right-handed alpha
Helix 39	AE3	C	1069	1080	Right-handed alpha
Helix 40	AE4	C	1081	1091	Right-handed alpha
Helix 41	AE5	C	1097	1109	Right-handed alpha
Helix 42	AE6	C	1118	1131	Right-handed alpha
Helix 43	AE7	D	16	24	Right-handed alpha
Helix 44	AE8	D	48	53	Right-handed alpha
Helix 45	AE9	D	67	71	Right-handed 310
Helix 46	AF1	D	84	90	Right-handed 310
Helix 47	AF2	D	104	107	Right-handed 310
Helix 48	AF3	D	112	119	Right-handed alpha
Helix 49	AF4	D	121	130	Right-handed alpha
Helix 50	AF5	D	140	147	Right-handed alpha
Helix 51	AF6	D	149	187	Right-handed alpha
Helix 52	AF7	D	190	228	Right-handed alpha
Helix 53	AF8	D	237	248	Right-handed alpha
Helix 54	AF9	D	257	267	Right-handed alpha
Helix 55	AG1	D	269	284	Right-handed alpha
Helix 56	AG2	D	286	300	Right-handed alpha
Helix 57	AG3	D	300	305	Right-handed alpha
Helix 58	AG4	D	308	311	Right-handed 310
Helix 59	AG5	D	321	325	Right-handed 310
Helix 60	AG6	D	340	361	Right-handed alpha
Helix 61	AG7	D	363	383	Right-handed alpha
Helix 62	AG8	D	411	416	Right-handed alpha
Helix 63	AG9	D	445	452	Right-handed alpha
Helix 64	AH1	D	452	463	Right-handed alpha
Helix 65	AH2	D	468	479	Right-handed alpha
Helix 66	AH3	D	484	491	Right-handed alpha
Helix 67	AH4	D	505	507	Right-handed 310
Helix 68	AH5	D	528	533	Right-handed alpha
Helix 69	AH6	D	548	558	Right-handed alpha
Helix 70	AH7	D	560	564	Right-handed 310
Helix 71	AH8	D	579	590	Right-handed alpha
Helix 72	AH9	D	614	624	Right-handed alpha
Helix 73	AI1	D	643	651	Right-handed alpha
Helix 74	AI2	D	667	675	Right-handed alpha
Helix 75	AI3	D	689	704	Right-handed alpha
Helix 76	AI4	D	705	728	Right-handed alpha
Helix 77	AI5	D	741	762	Right-handed alpha
Helix 78	AI6	D	766	793	Right-handed alpha
Helix 79	AI7	D	797	805	Right-handed alpha
Helix 80	AI8	D	810	818	Right-handed alpha
Helix 81	AI9	D	845	881	Right-handed alpha
Helix 82	AJ1	D	945	956	Right-handed alpha
Helix 83	AJ2	D	964	968	Right-handed 310
Helix 84	AJ3	D	976	980	Right-handed alpha
Helix 85	AJ4	D	994	1005	Right-handed alpha
Helix 86	AJ5	D	1027	1036	Right-handed alpha
Helix 87	AJ6	D	1117	1146	Right-handed alpha
Helix 88	AJ7	D	1150	1162	Right-handed alpha
Helix 89	AJ8	D	1183	1195	Right-handed alpha
Helix 90	AJ9	D	1209	1216	Right-handed alpha
Helix 91	AK1	D	1219	1227	Right-handed alpha
Helix 92	AK2	D	1228	1240	Right-handed alpha
Helix 93	AK3	D	1247	1254	Right-handed alpha
Helix 94	AK4	D	1260	1263	Right-handed 310
Helix 95	AK5	D	1264	1269	Right-handed alpha
Helix 96	AK6	D	1275	1282	Right-handed alpha
Helix 97	AK7	E	33	37	Right-handed 310
Helix 98	AK8	E	39	45	Right-handed alpha
Helix 99	AK9	E	49	70	Right-handed alpha
Helix 100	AL1	E	90	101	Right-handed alpha
Helix 101	AL2	F	211	221	Right-handed alpha
Helix 102	AL3	F	226	236	Right-handed alpha
Helix 103	AL4	F	242	267	Right-handed alpha
Helix 104	AL5	F	274	308	Right-handed alpha
Helix 105	AL6	F	309	311	Right-handed 310
Helix 106	AL7	F	316	334	Right-handed alpha
Helix 107	AL8	F	342	362	Right-handed alpha
Helix 108	AL9	F	369	391	Right-handed alpha
Helix 109	AM1	F	395	404	Right-handed alpha
Helix 110	AM2	F	406	417	Right-handed alpha
Helix 111	AM3	F	434	439	Right-handed 310
Helix 112	AM4	F	448	467	Right-handed alpha
Helix 113	AM5	F	468	480	Right-handed alpha
Helix 114	AM6	F	488	496	Right-handed alpha
Helix 115	AM7	F	499	516	Right-handed alpha
Helix 116	AM8	F	517	520	Right-handed 310
Helix 117	AM9	J	80	87	Right-handed alpha
Helix 118	AN1	J	90	110	Right-handed alpha
Helix 119	AN2	M	52	57	Right-handed alpha
Helix 120	AN3	M	63	75	Right-handed alpha
Helix 121	AN4	M	84	99	Right-handed alpha
Helix 122	AN5	M	100	119	Right-handed alpha
Helix 123	AN6	M	121	143	Right-handed alpha
Helix 124	AN7	M	146	158	Right-handed alpha

There are 46 sheets in PDB entry 9E85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	197	anti-parallel
Strand 4	A	173	178	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	144	anti-parallel
Strand 3	A	47	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	117	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	166	167	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	15	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	189	198	anti-parallel
Strand 4	B	171	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	143	anti-parallel
Strand 3	B	48	56	anti-parallel
Strand 4	B	162	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	972	973	parallel
Strand 3	C	626	627	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	155	158	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	147	151	anti-parallel
Strand 5	M	44	49	anti-parallel
Strand 6	M	34	39	anti-parallel
Strand 7	M	15	23	anti-parallel
Strand 8	M	8	11	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	161	first strand
Strand 2	C	165	168	anti-parallel
Strand 3	C	171	175	anti-parallel
Strand 4	C	437	439	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	497	499	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	191	first strand
Strand 2	C	198	205	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	216	first strand
Strand 2	C	222	224	anti-parallel
Strand 3	C	232	233	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	518	anti-parallel
Strand 3	C	528	531	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	518	anti-parallel
Strand 3	C	578	580	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	542	first strand
Strand 2	C	561	562	anti-parallel
Strand 3	C	568	569	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	701	704	anti-parallel
Strand 3	C	687	688	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	671	first strand
Strand 2	C	657	662	anti-parallel
Strand 3	C	648	654	anti-parallel
Strand 4	C	695	696	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1007	1008	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	884	886	anti-parallel
Strand 4	C	892	899	anti-parallel
Strand 5	C	735	738	parallel
Strand 6	C	915	916	anti-parallel
Strand 7	C	717	722	parallel
Strand 8	C	1023	1032	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	765	766	first strand
Strand 2	C	748	762	anti-parallel
Strand 3	C	865	878	anti-parallel
Strand 4	C	850	854	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	805	808	anti-parallel
Strand 3	C	832	834	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	784	785	first strand
Strand 2	C	788	790	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	803	first strand
Strand 2	C	837	838	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	944	945	first strand
Strand 2	C	965	966	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1068	first strand
Strand 2	D	420	422	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1133	1136	first strand
Strand 2	D	10	14	anti-parallel
Strand 3	D	1242	1243	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	74	first strand
Strand 2	D	81	82	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	138	anti-parallel
Strand 3	D	253	255	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	329	first strand
Strand 2	D	335	337	anti-parallel
Strand 3	F	421	422	parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	509	517	parallel
Strand 3	D	496	499	anti-parallel
Strand 4	D	540	544	anti-parallel
Strand 5	D	425	432	anti-parallel
Strand 6	D	522	524	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	633	637	parallel
Strand 3	D	662	666	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	822	825	first strand
Strand 2	D	831	836	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	886	888	first strand
Strand 2	D	974	975	parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	897	899	first strand
Strand 2	D	960	963	anti-parallel
Strand 3	D	924	925	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	903	904	first strand
Strand 2	D	910	911	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1064	1068	first strand
Strand 2	D	1051	1055	anti-parallel
Strand 3	D	1104	1105	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1180	1182	first strand
Strand 2	D	1164	1167	anti-parallel
Strand 3	D	1203	1206	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1271	1274	first strand
Strand 2	E	104	107	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	45	first strand
Strand 2	J	27	33	anti-parallel
Strand 3	J	61	64	anti-parallel
Strand 4	J	53	55	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E85

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E85