Analysis of interatomic Contacts of Structural Units in PDB entry:
9E8A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E8A entry

There are 3 chains in PDB entry 9E8A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 32	GLU 991
B	GLY 27	CYS 713
C	GLY 492	ASP 495

There are 31 helices in PDB entry 9E8A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	182	189	Right-handed alpha
Helix 2	AA2	A	218	223	Right-handed alpha
Helix 3	AA3	A	231	238	Right-handed alpha
Helix 4	AA4	A	258	262	Right-handed 310
Helix 5	AA5	A	290	295	Right-handed alpha
Helix 6	AA6	A	498	502	Right-handed 310
Helix 7	AA7	A	605	609	Right-handed 310
Helix 8	AA8	A	740	744	Right-handed 310
Helix 9	AA9	A	941	947	Right-handed alpha
Helix 10	AB1	B	29	34	Right-handed alpha
Helix 11	AB2	B	38	44	Right-handed alpha
Helix 12	AB3	B	66	73	Right-handed alpha
Helix 13	AB4	B	147	149	Right-handed 310
Helix 14	AB5	B	150	157	Right-handed alpha
Helix 15	AB6	B	159	169	Right-handed alpha
Helix 16	AB7	B	195	200	Right-handed 310
Helix 17	AB8	B	201	207	Right-handed 310
Helix 18	AB9	B	225	235	Right-handed alpha
Helix 19	AC1	B	247	258	Right-handed alpha
Helix 20	AC2	B	258	263	Right-handed alpha
Helix 21	AC3	B	284	288	Right-handed 310
Helix 22	AC4	B	307	311	Right-handed 310
Helix 23	AC5	B	317	329	Right-handed alpha
Helix 24	AC6	B	340	351	Right-handed alpha
Helix 25	AC7	B	365	378	Right-handed alpha
Helix 26	AC8	B	461	465	Right-handed 310
Helix 27	AC9	B	519	523	Right-handed 310
Helix 28	AD1	B	560	564	Right-handed 310
Helix 29	AD2	B	599	604	Right-handed 310
Helix 30	AD3	B	632	645	Right-handed alpha
Helix 31	AD4	B	655	660	Right-handed alpha

There are 27 sheets in PDB entry 9E8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	475	479	anti-parallel
Strand 3	A	465	470	anti-parallel
Strand 4	A	451	456	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	58	first strand
Strand 2	A	64	70	anti-parallel
Strand 3	A	83	87	anti-parallel
Strand 4	A	98	99	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	110	first strand
Strand 2	A	113	118	anti-parallel
Strand 3	A	143	148	anti-parallel
Strand 4	A	151	152	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	134	139	anti-parallel
Strand 3	A	160	164	anti-parallel
Strand 4	A	171	174	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	206	first strand
Strand 2	A	211	216	anti-parallel
Strand 3	A	225	230	anti-parallel
Strand 4	A	251	252	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	273	first strand
Strand 2	A	283	288	anti-parallel
Strand 3	A	297	301	anti-parallel
Strand 4	A	307	312	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	327	first strand
Strand 2	A	336	341	anti-parallel
Strand 3	A	358	362	anti-parallel
Strand 4	A	376	379	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	347	first strand
Strand 2	A	353	355	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	395	first strand
Strand 2	A	404	409	anti-parallel
Strand 3	A	419	423	anti-parallel
Strand 4	A	436	439	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	429	430	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	554	first strand
Strand 2	A	575	583	anti-parallel
Strand 3	A	514	525	anti-parallel
Strand 4	A	484	493	anti-parallel
Strand 5	A	616	620	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	497	first strand
Strand 2	A	623	629	parallel
Strand 3	A	596	600	anti-parallel
Strand 4	A	534	541	anti-parallel
Strand 5	A	562	567	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	643	650	first strand
Strand 2	A	660	670	anti-parallel
Strand 3	A	728	738	anti-parallel
Strand 4	A	689	695	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	767	774	parallel
Strand 3	A	747	755	anti-parallel
Strand 4	A	679	684	anti-parallel
Strand 5	A	713	719	anti-parallel
Strand 6	A	705	710	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	675	676	first strand
Strand 2	A	723	724	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	780	786	first strand
Strand 2	A	810	818	anti-parallel
Strand 3	A	931	940	anti-parallel
Strand 4	A	844	851	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	907	909	first strand
Strand 2	A	953	962	parallel
Strand 3	A	825	834	anti-parallel
Strand 4	A	917	926	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	907	909	first strand
Strand 2	A	953	962	parallel
Strand 3	A	979	985	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	91	first strand
Strand 2	B	113	118	anti-parallel
Strand 3	B	451	457	parallel
Strand 4	B	438	444	anti-parallel
Strand 5	B	381	386	anti-parallel
Strand 6	B	411	412	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	123	131	anti-parallel
Strand 3	B	420	429	anti-parallel
Strand 4	B	392	398	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	223	first strand
Strand 2	B	175	182	anti-parallel
Strand 3	B	138	145	parallel
Strand 4	B	269	276	parallel
Strand 5	B	330	336	parallel
Strand 6	B	354	358	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	468	first strand
Strand 2	B	479	482	anti-parallel
Strand 3	B	485	488	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	527	first strand
Strand 2	B	532	534	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	569	first strand
Strand 2	B	572	575	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	580	first strand
Strand 2	B	586	587	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	608	first strand
Strand 2	B	611	613	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	684	first strand
Strand 2	B	690	696	anti-parallel
Strand 3	B	704	706	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E8A

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E8A