Analysis of interatomic Contacts of Structural Units in PDB entry:
9E8B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E8B entry

There are 2 chains in PDB entry 9E8B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 32	LEU 631
B	GLY 27	CYS 532

There are 22 helices in PDB entry 9E8B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	182	189	Right-handed alpha
Helix 2	AA2	A	218	223	Right-handed alpha
Helix 3	AA3	A	231	238	Right-handed alpha
Helix 4	AA4	A	258	262	Right-handed 310
Helix 5	AA5	A	290	295	Right-handed alpha
Helix 6	AA6	B	28	34	Right-handed alpha
Helix 7	AA7	B	38	44	Right-handed alpha
Helix 8	AA8	B	66	73	Right-handed alpha
Helix 9	AA9	B	102	106	Right-handed 310
Helix 10	AB1	B	147	149	Right-handed 310
Helix 11	AB2	B	150	156	Right-handed alpha
Helix 12	AB3	B	159	170	Right-handed alpha
Helix 13	AB4	B	195	199	Right-handed 310
Helix 14	AB5	B	226	234	Right-handed alpha
Helix 15	AB6	B	247	258	Right-handed alpha
Helix 16	AB7	B	258	263	Right-handed alpha
Helix 17	AB8	B	284	290	Right-handed 310
Helix 18	AB9	B	317	329	Right-handed alpha
Helix 19	AC1	B	340	349	Right-handed alpha
Helix 20	AC2	B	365	379	Right-handed alpha
Helix 21	AC3	B	462	467	Right-handed alpha
Helix 22	AC4	B	519	524	Right-handed alpha

There are 18 sheets in PDB entry 9E8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	40	43	parallel
Strand 3	A	475	479	anti-parallel
Strand 4	A	465	470	anti-parallel
Strand 5	A	451	456	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	58	first strand
Strand 2	A	64	70	anti-parallel
Strand 3	A	83	88	anti-parallel
Strand 4	A	98	99	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	143	147	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	134	139	anti-parallel
Strand 3	A	160	164	anti-parallel
Strand 4	A	171	174	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	211	216	anti-parallel
Strand 3	A	225	230	anti-parallel
Strand 4	A	251	252	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	273	first strand
Strand 2	A	283	288	anti-parallel
Strand 3	A	297	301	anti-parallel
Strand 4	A	307	312	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	327	first strand
Strand 2	A	336	341	anti-parallel
Strand 3	A	358	362	anti-parallel
Strand 4	A	376	379	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	346	first strand
Strand 2	A	354	355	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	395	first strand
Strand 2	A	404	409	anti-parallel
Strand 3	A	419	423	anti-parallel
Strand 4	A	436	439	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	429	430	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	554	first strand
Strand 2	A	576	583	anti-parallel
Strand 3	A	516	525	anti-parallel
Strand 4	A	484	493	anti-parallel
Strand 5	A	616	619	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	566	first strand
Strand 2	A	535	541	anti-parallel
Strand 3	A	597	603	anti-parallel
Strand 4	A	622	626	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	80	81	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	91	first strand
Strand 2	B	113	118	anti-parallel
Strand 3	B	451	457	parallel
Strand 4	B	438	444	anti-parallel
Strand 5	B	380	386	anti-parallel
Strand 6	B	411	413	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	129	131	anti-parallel
Strand 3	B	420	429	anti-parallel
Strand 4	B	123	126	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	129	131	anti-parallel
Strand 3	B	420	429	anti-parallel
Strand 4	B	392	399	anti-parallel
Strand 5	B	405	407	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	223	first strand
Strand 2	B	175	182	anti-parallel
Strand 3	B	138	145	parallel
Strand 4	B	269	276	parallel
Strand 5	B	331	336	parallel
Strand 6	B	355	358	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	480	481	first strand
Strand 2	B	486	487	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E8B

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E8B