Analysis of interatomic Contacts of Structural Units in PDB entry:
9E8C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E8C entry

There are 4 chains in PDB entry 9E8C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 32	CYS 633
B	GLY 27	CYS 532
C	LEU 32	CYS 633
D	GLY 27	CYS 532

There are 43 helices in PDB entry 9E8C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	182	189	Right-handed alpha
Helix 2	AA2	A	218	223	Right-handed alpha
Helix 3	AA3	A	231	238	Right-handed alpha
Helix 4	AA4	A	258	262	Right-handed 310
Helix 5	AA5	A	290	295	Right-handed alpha
Helix 6	AA6	A	590	594	Right-handed 310
Helix 7	AA7	B	38	46	Right-handed alpha
Helix 8	AA8	B	67	73	Right-handed alpha
Helix 9	AA9	B	147	149	Right-handed 310
Helix 10	AB1	B	150	159	Right-handed alpha
Helix 11	AB2	B	160	170	Right-handed alpha
Helix 12	AB3	B	195	201	Right-handed alpha
Helix 13	AB4	B	225	233	Right-handed alpha
Helix 14	AB5	B	247	258	Right-handed alpha
Helix 15	AB6	B	258	263	Right-handed alpha
Helix 16	AB7	B	285	290	Right-handed alpha
Helix 17	AB8	B	317	328	Right-handed alpha
Helix 18	AB9	B	340	351	Right-handed alpha
Helix 19	AC1	B	365	378	Right-handed alpha
Helix 20	AC2	B	461	467	Right-handed alpha
Helix 21	AC3	C	182	189	Right-handed alpha
Helix 22	AC4	C	218	223	Right-handed alpha
Helix 23	AC5	C	231	237	Right-handed alpha
Helix 24	AC6	C	258	262	Right-handed 310
Helix 25	AC7	C	290	295	Right-handed alpha
Helix 26	AC8	C	606	610	Right-handed 310
Helix 27	AC9	D	38	46	Right-handed alpha
Helix 28	AD1	D	67	73	Right-handed alpha
Helix 29	AD2	D	102	106	Right-handed 310
Helix 30	AD3	D	147	149	Right-handed 310
Helix 31	AD4	D	150	156	Right-handed alpha
Helix 32	AD5	D	159	169	Right-handed alpha
Helix 33	AD6	D	225	233	Right-handed alpha
Helix 34	AD7	D	247	258	Right-handed alpha
Helix 35	AD8	D	258	263	Right-handed alpha
Helix 36	AD9	D	284	290	Right-handed 310
Helix 37	AE1	D	317	328	Right-handed alpha
Helix 38	AE2	D	340	349	Right-handed alpha
Helix 39	AE3	D	365	379	Right-handed alpha
Helix 40	AE4	D	461	466	Right-handed alpha
Helix 41	AE5	D	489	493	Right-handed 310
Helix 42	AE6	D	519	524	Right-handed alpha
Helix 43	AE7	D	528	532	Right-handed 310

There are 35 sheets in PDB entry 9E8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	475	479	anti-parallel
Strand 3	A	466	469	anti-parallel
Strand 4	A	451	453	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	58	first strand
Strand 2	A	64	69	anti-parallel
Strand 3	A	84	88	anti-parallel
Strand 4	A	98	99	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	110	first strand
Strand 2	A	113	118	anti-parallel
Strand 3	A	143	148	anti-parallel
Strand 4	A	151	152	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	134	139	anti-parallel
Strand 3	A	160	164	anti-parallel
Strand 4	A	171	174	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	211	216	anti-parallel
Strand 3	A	225	230	anti-parallel
Strand 4	A	251	252	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	283	288	anti-parallel
Strand 3	A	297	301	anti-parallel
Strand 4	A	309	312	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	327	first strand
Strand 2	A	336	341	anti-parallel
Strand 3	A	358	362	anti-parallel
Strand 4	A	377	379	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	346	first strand
Strand 2	A	354	355	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	395	first strand
Strand 2	A	404	409	anti-parallel
Strand 3	A	419	423	anti-parallel
Strand 4	A	436	439	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	525	first strand
Strand 2	A	484	493	anti-parallel
Strand 3	A	616	619	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	497	first strand
Strand 2	A	626	629	parallel
Strand 3	A	596	603	anti-parallel
Strand 4	A	536	541	anti-parallel
Strand 5	A	561	564	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	497	first strand
Strand 2	A	626	629	parallel
Strand 3	A	596	603	anti-parallel
Strand 4	A	622	623	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	505	first strand
Strand 2	A	512	513	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	553	554	first strand
Strand 2	A	581	582	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	64	66	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	91	first strand
Strand 2	B	113	116	anti-parallel
Strand 3	B	451	455	parallel
Strand 4	B	440	442	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	123	130	anti-parallel
Strand 3	B	421	428	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	223	first strand
Strand 2	B	175	182	anti-parallel
Strand 3	B	138	145	parallel
Strand 4	B	269	276	parallel
Strand 5	B	332	337	parallel
Strand 6	B	354	359	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	506	first strand
Strand 2	B	514	516	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	43	first strand
Strand 2	C	475	479	anti-parallel
Strand 3	C	465	470	anti-parallel
Strand 4	C	451	456	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	58	first strand
Strand 2	C	64	69	anti-parallel
Strand 3	C	84	88	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	108	first strand
Strand 2	C	115	118	anti-parallel
Strand 3	C	143	146	anti-parallel
Strand 4	C	156	157	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	134	139	anti-parallel
Strand 3	C	160	164	anti-parallel
Strand 4	C	172	174	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	206	first strand
Strand 2	C	211	216	anti-parallel
Strand 3	C	225	230	anti-parallel
Strand 4	C	251	252	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	273	first strand
Strand 2	C	283	288	anti-parallel
Strand 3	C	297	301	anti-parallel
Strand 4	C	307	312	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	327	first strand
Strand 2	C	336	341	anti-parallel
Strand 3	C	358	362	anti-parallel
Strand 4	C	376	379	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	346	first strand
Strand 2	C	354	355	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	395	first strand
Strand 2	C	404	409	anti-parallel
Strand 3	C	419	423	anti-parallel
Strand 4	C	436	439	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	493	first strand
Strand 2	C	512	525	anti-parallel
Strand 3	C	503	505	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	493	first strand
Strand 2	C	512	525	anti-parallel
Strand 3	C	579	583	anti-parallel
Strand 4	C	552	554	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	561	567	first strand
Strand 2	C	534	541	anti-parallel
Strand 3	C	596	603	anti-parallel
Strand 4	C	622	627	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	65	66	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	91	first strand
Strand 2	D	113	118	anti-parallel
Strand 3	D	451	457	parallel
Strand 4	D	437	444	anti-parallel
Strand 5	D	380	386	anti-parallel
Strand 6	D	411	413	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	110	first strand
Strand 2	D	123	131	anti-parallel
Strand 3	D	420	428	anti-parallel
Strand 4	D	393	399	anti-parallel
Strand 5	D	405	408	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	223	first strand
Strand 2	D	176	182	anti-parallel
Strand 3	D	138	145	parallel
Strand 4	D	269	276	parallel
Strand 5	D	331	337	parallel
Strand 6	D	354	359	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E8C

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E8C