Analysis of interatomic Contacts of Structural Units in PDB entry:
9E8N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E8N entry

There are 15 chains in PDB entry 9E8N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 19	LYS 422
C	ARG 21	LYS 406
E	LYS 15	VAL 389
H	SER 6	GLU 244
J	GLY 5	ALA 234
K	ARG 4	LYS 251
L	SER 2	GLU 240
M	ASN 4	GLN 241
N	THR 5	LYS 244
v	UNK 12	UNK 25
D	ASP 39	LYS 408
B	SER 47	PRO 435
F	ARG 46	ALA 439
P	TYR 8	ILE 241
c	ALA 24	LYS 310

There are153 helices in PDB entry 9E8N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	36	Right-handed alpha
Helix 2	AA2	A	41	64	Right-handed alpha
Helix 3	AA3	A	74	78	Right-handed 310
Helix 4	AA4	A	79	90	Right-handed alpha
Helix 5	AA5	A	130	134	Right-handed 310
Helix 6	AA6	A	158	163	Right-handed alpha
Helix 7	AA7	A	180	191	Right-handed alpha
Helix 8	AA8	A	191	197	Right-handed alpha
Helix 9	AA9	A	197	205	Right-handed alpha
Helix 10	AB1	A	221	233	Right-handed alpha
Helix 11	AB2	A	251	267	Right-handed alpha
Helix 12	AB3	A	277	280	Right-handed 310
Helix 13	AB4	A	292	307	Right-handed alpha
Helix 14	AB5	A	328	333	Right-handed alpha
Helix 15	AB6	A	347	362	Right-handed alpha
Helix 16	AB7	A	369	377	Right-handed alpha
Helix 17	AB8	A	381	399	Right-handed alpha
Helix 18	AB9	A	405	422	Right-handed alpha
Helix 19	AC1	C	22	67	Right-handed alpha
Helix 20	AC2	C	104	108	Right-handed 310
Helix 21	AC3	C	147	151	Right-handed 310
Helix 22	AC4	C	155	165	Right-handed alpha
Helix 23	AC5	C	165	171	Right-handed alpha
Helix 24	AC6	C	171	178	Right-handed alpha
Helix 25	AC7	C	195	208	Right-handed alpha
Helix 26	AC8	C	215	220	Right-handed alpha
Helix 27	AC9	C	226	241	Right-handed alpha
Helix 28	AD1	C	270	283	Right-handed alpha
Helix 29	AD2	C	299	306	Right-handed alpha
Helix 30	AD3	C	321	334	Right-handed alpha
Helix 31	AD4	C	343	349	Right-handed alpha
Helix 32	AD5	C	355	372	Right-handed alpha
Helix 33	AD6	C	379	394	Right-handed alpha
Helix 34	AD7	C	396	406	Right-handed alpha
Helix 35	AD8	E	16	51	Right-handed alpha
Helix 36	AD9	E	88	92	Right-handed 310
Helix 37	AE1	E	116	124	Right-handed alpha
Helix 38	AE2	E	131	135	Right-handed 310
Helix 39	AE3	E	138	150	Right-handed alpha
Helix 40	AE4	E	150	155	Right-handed alpha
Helix 41	AE5	E	156	163	Right-handed alpha
Helix 42	AE6	E	179	191	Right-handed alpha
Helix 43	AE7	E	209	225	Right-handed alpha
Helix 44	AE8	E	235	240	Right-handed alpha
Helix 45	AE9	E	247	266	Right-handed alpha
Helix 46	AF1	E	281	285	Right-handed 310
Helix 47	AF2	E	286	291	Right-handed alpha
Helix 48	AF3	E	305	318	Right-handed alpha
Helix 49	AF4	E	327	335	Right-handed alpha
Helix 50	AF5	E	339	357	Right-handed alpha
Helix 51	AF6	E	363	379	Right-handed alpha
Helix 52	AF7	H	22	35	Right-handed alpha
Helix 53	AF8	H	62	67	Right-handed 310
Helix 54	AF9	H	83	106	Right-handed alpha
Helix 55	AG1	H	110	128	Right-handed alpha
Helix 56	AG2	H	172	184	Right-handed alpha
Helix 57	AG3	H	190	206	Right-handed alpha
Helix 58	AG4	H	211	213	Right-handed 310
Helix 59	AG5	H	231	243	Right-handed alpha
Helix 60	AG6	J	19	31	Right-handed alpha
Helix 61	AG7	J	79	102	Right-handed alpha
Helix 62	AG8	J	106	121	Right-handed alpha
Helix 63	AG9	J	167	178	Right-handed alpha
Helix 64	AH1	J	183	199	Right-handed alpha
Helix 65	AH2	J	222	231	Right-handed alpha
Helix 66	AH3	K	18	30	Right-handed alpha
Helix 67	AH4	K	79	102	Right-handed alpha
Helix 68	AH5	K	106	124	Right-handed alpha
Helix 69	AH6	K	167	178	Right-handed alpha
Helix 70	AH7	K	185	201	Right-handed alpha
Helix 71	AH8	K	207	209	Right-handed 310
Helix 72	AH9	K	229	250	Right-handed alpha
Helix 73	AI1	L	16	29	Right-handed alpha
Helix 74	AI2	L	56	60	Right-handed 310
Helix 75	AI3	L	76	98	Right-handed alpha
Helix 76	AI4	L	103	120	Right-handed alpha
Helix 77	AI5	L	161	176	Right-handed alpha
Helix 78	AI6	L	182	198	Right-handed alpha
Helix 79	AI7	L	221	239	Right-handed alpha
Helix 80	AI8	M	19	31	Right-handed alpha
Helix 81	AI9	M	77	99	Right-handed alpha
Helix 82	AJ1	M	104	122	Right-handed alpha
Helix 83	AJ2	M	164	176	Right-handed alpha
Helix 84	AJ3	M	177	182	Right-handed 310
Helix 85	AJ4	M	183	199	Right-handed alpha
Helix 86	AJ5	M	225	233	Right-handed alpha
Helix 87	AJ6	N	20	32	Right-handed alpha
Helix 88	AJ7	N	80	102	Right-handed alpha
Helix 89	AJ8	N	107	125	Right-handed alpha
Helix 90	AJ9	N	168	178	Right-handed alpha
Helix 91	AK1	N	185	200	Right-handed alpha
Helix 92	AK2	N	233	241	Right-handed alpha
Helix 93	AK3	D	40	83	Right-handed alpha
Helix 94	AK4	D	120	124	Right-handed 310
Helix 95	AK5	D	170	181	Right-handed alpha
Helix 96	AK6	D	181	187	Right-handed alpha
Helix 97	AK7	D	189	194	Right-handed alpha
Helix 98	AK8	D	211	223	Right-handed alpha
Helix 99	AK9	D	231	236	Right-handed alpha
Helix 100	AL1	D	242	257	Right-handed alpha
Helix 101	AL2	D	281	298	Right-handed alpha
Helix 102	AL3	D	318	323	Right-handed alpha
Helix 103	AL4	D	339	352	Right-handed alpha
Helix 104	AL5	D	359	366	Right-handed alpha
Helix 105	AL6	D	371	389	Right-handed alpha
Helix 106	AL7	D	395	406	Right-handed alpha
Helix 107	AL8	B	58	76	Right-handed alpha
Helix 108	AL9	B	94	103	Right-handed alpha
Helix 109	AM1	B	168	175	Right-handed alpha
Helix 110	AM2	B	183	187	Right-handed 310
Helix 111	AM3	B	190	201	Right-handed alpha
Helix 112	AM4	B	208	215	Right-handed alpha
Helix 113	AM5	B	231	243	Right-handed alpha
Helix 114	AM6	B	252	256	Right-handed alpha
Helix 115	AM7	B	261	278	Right-handed alpha
Helix 116	AM8	B	286	290	Right-handed 310
Helix 117	AM9	B	301	316	Right-handed alpha
Helix 118	AN1	B	338	343	Right-handed alpha
Helix 119	AN2	B	357	369	Right-handed alpha
Helix 120	AN3	B	391	409	Right-handed alpha
Helix 121	AN4	B	415	429	Right-handed alpha
Helix 122	AN5	F	51	84	Right-handed alpha
Helix 123	AN6	F	169	176	Right-handed alpha
Helix 124	AN7	F	184	188	Right-handed 310
Helix 125	AN8	F	191	208	Right-handed alpha
Helix 126	AN9	F	209	216	Right-handed alpha
Helix 127	AO1	F	232	245	Right-handed alpha
Helix 128	AO2	F	254	257	Right-handed 310
Helix 129	AO3	F	262	278	Right-handed alpha
Helix 130	AO4	F	288	293	Right-handed alpha
Helix 131	AO5	F	304	319	Right-handed alpha
Helix 132	AO6	F	334	338	Right-handed 310
Helix 133	AO7	F	358	371	Right-handed alpha
Helix 134	AO8	F	380	388	Right-handed alpha
Helix 135	AO9	F	392	411	Right-handed alpha
Helix 136	AP1	F	416	428	Right-handed alpha
Helix 137	AP2	P	23	33	Right-handed alpha
Helix 138	AP3	P	60	64	Right-handed 310
Helix 139	AP4	P	81	104	Right-handed alpha
Helix 140	AP5	P	108	121	Right-handed alpha
Helix 141	AP6	P	173	185	Right-handed alpha
Helix 142	AP7	P	190	206	Right-handed alpha
Helix 143	AP8	P	233	241	Right-handed alpha
Helix 144	AP9	c	34	48	Right-handed alpha
Helix 145	AQ1	c	88	101	Right-handed alpha
Helix 146	AQ2	c	123	136	Right-handed alpha
Helix 147	AQ3	c	164	170	Right-handed alpha
Helix 148	AQ4	c	188	194	Right-handed alpha
Helix 149	AQ5	c	210	218	Right-handed alpha
Helix 150	AQ6	c	219	221	Right-handed 310
Helix 151	AQ7	c	224	229	Right-handed alpha
Helix 152	AQ8	c	233	261	Right-handed alpha
Helix 153	AQ9	c	279	309	Right-handed alpha

There are 29 sheets in PDB entry 9E8N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	140	142	anti-parallel
Strand 3	A	93	95	anti-parallel
Strand 4	B	130	134	anti-parallel
Strand 5	B	120	124	anti-parallel
Strand 6	B	107	112	anti-parallel
Strand 7	C	94	98	anti-parallel
Strand 8	C	84	89	anti-parallel
Strand 9	C	74	78	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	140	142	anti-parallel
Strand 3	A	93	95	anti-parallel
Strand 4	B	130	134	anti-parallel
Strand 5	B	120	124	anti-parallel
Strand 6	B	107	112	anti-parallel
Strand 7	B	148	153	anti-parallel
Strand 8	B	159	162	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	99	first strand
Strand 2	A	111	115	anti-parallel
Strand 3	A	119	123	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	241	first strand
Strand 2	A	270	275	parallel
Strand 3	A	315	321	parallel
Strand 4	A	211	215	parallel
Strand 5	A	339	342	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	116	first strand
Strand 2	C	123	125	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	141	first strand
Strand 2	C	210	214	anti-parallel
Strand 3	C	244	248	parallel
Strand 4	C	290	294	parallel
Strand 5	C	185	189	parallel
Strand 6	C	315	316	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	81	first strand
Strand 2	E	68	72	anti-parallel
Strand 3	E	55	65	anti-parallel
Strand 4	E	97	101	anti-parallel
Strand 5	E	107	110	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	81	first strand
Strand 2	E	68	72	anti-parallel
Strand 3	E	55	65	anti-parallel
Strand 4	F	131	134	anti-parallel
Strand 5	F	122	126	anti-parallel
Strand 6	F	90	93	anti-parallel
Strand 7	F	150	152	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	199	first strand
Strand 2	E	228	233	parallel
Strand 3	E	275	279	parallel
Strand 4	E	169	173	parallel
Strand 5	E	299	300	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	169	first strand
Strand 2	H	38	43	anti-parallel
Strand 3	H	47	53	anti-parallel
Strand 4	H	215	221	anti-parallel
Strand 5	H	228	229	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	69	73	first strand
Strand 2	H	76	82	anti-parallel
Strand 3	H	136	143	anti-parallel
Strand 4	H	149	154	anti-parallel
Strand 5	H	160	163	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	160	163	first strand
Strand 2	J	35	39	anti-parallel
Strand 3	J	44	49	anti-parallel
Strand 4	J	208	213	anti-parallel
Strand 5	J	218	220	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	72	78	first strand
Strand 2	J	132	140	anti-parallel
Strand 3	J	143	150	anti-parallel
Strand 4	J	154	157	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	162	163	first strand
Strand 2	K	35	36	anti-parallel
Strand 3	K	42	48	anti-parallel
Strand 4	K	211	217	anti-parallel
Strand 5	K	224	227	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	66	first strand
Strand 2	K	72	78	anti-parallel
Strand 3	K	132	138	anti-parallel
Strand 4	K	146	150	anti-parallel
Strand 5	K	156	158	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	160	first strand
Strand 2	L	32	36	anti-parallel
Strand 3	L	41	45	anti-parallel
Strand 4	L	207	211	anti-parallel
Strand 5	L	217	219	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	63	66	first strand
Strand 2	L	69	71	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	74	75	first strand
Strand 2	L	129	138	anti-parallel
Strand 3	L	141	148	anti-parallel
Strand 4	L	152	156	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	158	159	first strand
Strand 2	M	35	39	anti-parallel
Strand 3	M	43	49	anti-parallel
Strand 4	M	210	216	anti-parallel
Strand 5	M	219	224	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	63	67	first strand
Strand 2	M	70	76	anti-parallel
Strand 3	M	130	137	anti-parallel
Strand 4	M	142	148	anti-parallel
Strand 5	M	152	155	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	162	165	first strand
Strand 2	N	36	40	anti-parallel
Strand 3	N	44	52	anti-parallel
Strand 4	N	209	217	anti-parallel
Strand 5	N	224	225	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	66	67	first strand
Strand 2	N	73	79	anti-parallel
Strand 3	N	133	141	anti-parallel
Strand 4	N	145	151	anti-parallel
Strand 5	N	157	158	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	114	first strand
Strand 2	D	100	105	anti-parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	128	132	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	229	first strand
Strand 2	D	261	263	parallel
Strand 3	D	306	310	parallel
Strand 4	D	201	204	parallel
Strand 5	D	330	331	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	251	first strand
Strand 2	B	280	285	parallel
Strand 3	B	326	331	parallel
Strand 4	B	221	225	parallel
Strand 5	B	349	352	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	252	first strand
Strand 2	F	281	286	parallel
Strand 3	F	326	332	parallel
Strand 4	F	222	226	parallel
Strand 5	F	350	353	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	167	170	first strand
Strand 2	P	37	41	anti-parallel
Strand 3	P	46	51	anti-parallel
Strand 4	P	215	220	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	74	80	first strand
Strand 2	P	139	147	anti-parallel
Strand 3	P	150	156	anti-parallel
Strand 4	P	162	164	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	200	203	first strand
Strand 2	c	157	162	anti-parallel
Strand 3	c	141	145	anti-parallel
Strand 4	c	107	114	parallel
Strand 5	c	54	63	anti-parallel
Strand 6	c	66	74	anti-parallel
Strand 7	c	31	33	parallel
Strand 8	c	205	207	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E8N

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E8N