Analysis of interatomic Contacts of Structural Units in PDB entry:
9E8Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E8Z entry

There are 9 chains in PDB entry 9E8Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLN 3	ASP 536
E	ALA 10	THR 239
H	ASP 4	SER 309
I	A 5	C 83
J	G 45	U 82
A	LEU 5	GLN 542
B	LEU 3	TYR 260
D	LEU 5	ASP 537
F	LEU 5	GLN 542

There are127 helices in PDB entry 9E8Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	6	19	Right-handed alpha
Helix 2	AA2	C	21	29	Right-handed alpha
Helix 3	AA3	C	42	55	Right-handed alpha
Helix 4	AA4	C	97	106	Right-handed alpha
Helix 5	AA5	C	108	118	Right-handed alpha
Helix 6	AA6	C	127	131	Right-handed 310
Helix 7	AA7	C	170	187	Right-handed alpha
Helix 8	AA8	C	199	205	Right-handed 310
Helix 9	AA9	C	207	213	Right-handed alpha
Helix 10	AB1	C	218	222	Right-handed 310
Helix 11	AB2	C	224	228	Right-handed 310
Helix 12	AB3	C	239	256	Right-handed alpha
Helix 13	AB4	C	258	276	Right-handed alpha
Helix 14	AB5	C	276	286	Right-handed alpha
Helix 15	AB6	C	289	315	Right-handed alpha
Helix 16	AB7	C	318	332	Right-handed alpha
Helix 17	AB8	C	359	361	Right-handed 310
Helix 18	AB9	C	362	383	Right-handed alpha
Helix 19	AC1	C	413	421	Right-handed alpha
Helix 20	AC2	C	432	437	Right-handed alpha
Helix 21	AC3	C	463	473	Right-handed alpha
Helix 22	AC4	C	481	495	Right-handed alpha
Helix 23	AC5	C	501	514	Right-handed alpha
Helix 24	AC6	C	520	535	Right-handed alpha
Helix 25	AC7	E	12	22	Right-handed alpha
Helix 26	AC8	E	27	32	Right-handed alpha
Helix 27	AC9	E	36	50	Right-handed alpha
Helix 28	AD1	E	90	92	Right-handed 310
Helix 29	AD2	E	116	127	Right-handed alpha
Helix 30	AD3	E	180	192	Right-handed alpha
Helix 31	AD4	E	198	205	Right-handed alpha
Helix 32	AD5	E	207	214	Right-handed alpha
Helix 33	AD6	E	217	228	Right-handed alpha
Helix 34	AD7	H	5	10	Right-handed alpha
Helix 35	AD8	H	23	26	Right-handed 310
Helix 36	AD9	H	49	62	Right-handed alpha
Helix 37	AE1	H	63	65	Right-handed 310
Helix 38	AE2	H	80	87	Right-handed alpha
Helix 39	AE3	H	107	118	Right-handed alpha
Helix 40	AE4	H	122	133	Right-handed alpha
Helix 41	AE5	H	153	161	Right-handed alpha
Helix 42	AE6	H	163	176	Right-handed alpha
Helix 43	AE7	H	196	209	Right-handed alpha
Helix 44	AE8	H	248	265	Right-handed alpha
Helix 45	AE9	H	268	282	Right-handed alpha
Helix 46	AF1	H	288	297	Right-handed alpha
Helix 47	AF2	H	298	303	Right-handed alpha
Helix 48	AF3	A	6	18	Right-handed alpha
Helix 49	AF4	A	20	33	Right-handed alpha
Helix 50	AF5	A	34	38	Right-handed 310
Helix 51	AF6	A	41	54	Right-handed alpha
Helix 52	AF7	A	97	117	Right-handed alpha
Helix 53	AF8	A	172	185	Right-handed alpha
Helix 54	AF9	A	199	205	Right-handed 310
Helix 55	AG1	A	207	212	Right-handed alpha
Helix 56	AG2	A	238	252	Right-handed alpha
Helix 57	AG3	A	262	275	Right-handed alpha
Helix 58	AG4	A	276	286	Right-handed alpha
Helix 59	AG5	A	289	313	Right-handed alpha
Helix 60	AG6	A	320	332	Right-handed alpha
Helix 61	AG7	A	359	361	Right-handed 310
Helix 62	AG8	A	362	383	Right-handed alpha
Helix 63	AG9	A	406	411	Right-handed alpha
Helix 64	AH1	A	412	421	Right-handed alpha
Helix 65	AH2	A	434	438	Right-handed 310
Helix 66	AH3	A	440	442	Right-handed 310
Helix 67	AH4	A	463	472	Right-handed alpha
Helix 68	AH5	A	481	495	Right-handed alpha
Helix 69	AH6	A	502	516	Right-handed alpha
Helix 70	AH7	A	521	536	Right-handed alpha
Helix 71	AH8	B	12	22	Right-handed alpha
Helix 72	AH9	B	26	33	Right-handed alpha
Helix 73	AI1	B	36	51	Right-handed alpha
Helix 74	AI2	B	65	69	Right-handed 310
Helix 75	AI3	B	90	92	Right-handed 310
Helix 76	AI4	B	117	128	Right-handed alpha
Helix 77	AI5	B	163	168	Right-handed alpha
Helix 78	AI6	B	176	178	Right-handed 310
Helix 79	AI7	B	179	192	Right-handed alpha
Helix 80	AI8	B	195	212	Right-handed alpha
Helix 81	AI9	B	217	230	Right-handed alpha
Helix 82	AJ1	B	236	247	Right-handed alpha
Helix 83	AJ2	B	247	255	Right-handed alpha
Helix 84	AJ3	D	7	19	Right-handed alpha
Helix 85	AJ4	D	21	28	Right-handed alpha
Helix 86	AJ5	D	45	50	Right-handed alpha
Helix 87	AJ6	D	51	54	Right-handed 310
Helix 88	AJ7	D	97	117	Right-handed alpha
Helix 89	AJ8	D	127	131	Right-handed 310
Helix 90	AJ9	D	181	185	Right-handed 310
Helix 91	AK1	D	239	256	Right-handed alpha
Helix 92	AK2	D	259	274	Right-handed alpha
Helix 93	AK3	D	276	285	Right-handed alpha
Helix 94	AK4	D	289	313	Right-handed alpha
Helix 95	AK5	D	319	332	Right-handed alpha
Helix 96	AK6	D	363	383	Right-handed alpha
Helix 97	AK7	D	406	412	Right-handed alpha
Helix 98	AK8	D	413	421	Right-handed alpha
Helix 99	AK9	D	435	439	Right-handed 310
Helix 100	AL1	D	463	472	Right-handed alpha
Helix 101	AL2	D	483	495	Right-handed alpha
Helix 102	AL3	D	501	515	Right-handed alpha
Helix 103	AL4	D	521	526	Right-handed alpha
Helix 104	AL5	D	528	535	Right-handed alpha
Helix 105	AL6	F	6	19	Right-handed alpha
Helix 106	AL7	F	21	33	Right-handed alpha
Helix 107	AL8	F	34	38	Right-handed 310
Helix 108	AL9	F	41	54	Right-handed alpha
Helix 109	AM1	F	100	117	Right-handed alpha
Helix 110	AM2	F	127	131	Right-handed 310
Helix 111	AM3	F	170	187	Right-handed alpha
Helix 112	AM4	F	200	205	Right-handed alpha
Helix 113	AM5	F	225	230	Right-handed 310
Helix 114	AM6	F	238	249	Right-handed alpha
Helix 115	AM7	F	256	275	Right-handed alpha
Helix 116	AM8	F	276	284	Right-handed alpha
Helix 117	AM9	F	285	312	Right-handed alpha
Helix 118	AN1	F	312	329	Right-handed alpha
Helix 119	AN2	F	362	383	Right-handed alpha
Helix 120	AN3	F	406	411	Right-handed alpha
Helix 121	AN4	F	413	421	Right-handed alpha
Helix 122	AN5	F	432	437	Right-handed alpha
Helix 123	AN6	F	463	471	Right-handed alpha
Helix 124	AN7	F	481	495	Right-handed alpha
Helix 125	AN8	F	496	500	Right-handed 310
Helix 126	AN9	F	501	515	Right-handed alpha
Helix 127	AO1	F	519	542	Right-handed alpha

There are 25 sheets in PDB entry 9E8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	80	first strand
Strand 2	C	61	69	anti-parallel
Strand 3	C	137	146	anti-parallel
Strand 4	C	149	151	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	80	first strand
Strand 2	C	61	69	anti-parallel
Strand 3	C	137	146	anti-parallel
Strand 4	C	154	158	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	428	429	first strand
Strand 2	C	89	92	parallel
Strand 3	C	445	448	parallel
Strand 4	C	451	454	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	198	first strand
Strand 2	C	394	398	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	341	first strand
Strand 2	C	346	351	anti-parallel
Strand 3	C	354	357	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	73	first strand
Strand 2	E	94	96	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	28	34	first strand
Strand 2	H	40	46	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	178	181	first strand
Strand 2	H	188	191	anti-parallel
Strand 3	H	92	95	anti-parallel
Strand 4	H	224	226	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	136	first strand
Strand 2	H	145	146	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	233	234	first strand
Strand 2	H	237	239	anti-parallel
Strand 3	H	245	246	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	A	62	71	anti-parallel
Strand 3	A	139	145	anti-parallel
Strand 4	A	150	151	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	A	62	71	anti-parallel
Strand 3	A	139	145	anti-parallel
Strand 4	A	154	156	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	429	first strand
Strand 2	A	88	90	parallel
Strand 3	A	444	447	parallel
Strand 4	A	452	454	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	198	first strand
Strand 2	A	394	398	parallel
Strand 3	A	424	425	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	340	first strand
Strand 2	A	347	351	anti-parallel
Strand 3	A	355	357	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	73	first strand
Strand 2	B	94	97	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	160	161	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	69	first strand
Strand 2	D	139	145	anti-parallel
Strand 3	D	155	156	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	91	first strand
Strand 2	D	445	448	parallel
Strand 3	D	451	453	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	198	first strand
Strand 2	D	394	398	parallel
Strand 3	D	425	428	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	350	first strand
Strand 2	D	354	356	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	80	first strand
Strand 2	F	61	71	anti-parallel
Strand 3	F	143	146	anti-parallel
Strand 4	F	150	152	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	80	first strand
Strand 2	F	61	71	anti-parallel
Strand 3	F	139	140	anti-parallel
Strand 4	F	155	156	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	194	198	first strand
Strand 2	F	394	399	parallel
Strand 3	F	424	429	parallel
Strand 4	F	88	92	parallel
Strand 5	F	444	448	parallel
Strand 6	F	451	453	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	336	340	first strand
Strand 2	F	347	351	anti-parallel
Strand 3	F	354	356	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E8Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E8Z