Analysis of interatomic Contacts of Structural Units in PDB entry:
9E90


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9E90 entry

There are 3 chains in PDB entry 9E90 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 3TYR 260
A
 MET 1GLN 542
C
 MET 1LYS 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 9E90. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
14 21Right-handed alpha
Helix 2
AA2
B
26 32Right-handed alpha
Helix 3
AA3
B
36 50Right-handed alpha
Helix 4
AA4
B
65 69Right-handed 310
Helix 5
AA5
B
76 80Right-handed 310
Helix 6
AA6
B
117 127Right-handed alpha
Helix 7
AA7
B
176 178Right-handed 310
Helix 8
AA8
B
179 192Right-handed alpha
Helix 9
AA9
B
195 200Right-handed alpha
Helix 10
AB1
B
202 212Right-handed alpha
Helix 11
AB2
B
217 229Right-handed alpha
Helix 12
AB3
B
236 247Right-handed alpha
Helix 13
AB4
B
247 255Right-handed alpha
Helix 14
AB5
A
8 17Right-handed alpha
Helix 15
AB6
A
21 26Right-handed alpha
Helix 16
AB7
A
26 32Right-handed alpha
Helix 17
AB8
A
43 48Right-handed alpha
Helix 18
AB9
A
98 118Right-handed alpha
Helix 19
AC1
A
172 187Right-handed alpha
Helix 20
AC2
A
207 213Right-handed alpha
Helix 21
AC3
A
224 230Right-handed 310
Helix 22
AC4
A
238 261Right-handed alpha
Helix 23
AC5
A
318 332Right-handed alpha
Helix 24
AC6
A
359 361Right-handed 310
Helix 25
AC7
A
362 383Right-handed alpha
Helix 26
AC8
A
406 411Right-handed alpha
Helix 27
AC9
A
412 421Right-handed alpha
Helix 28
AD1
A
432 437Right-handed alpha
Helix 29
AD2
A
438 439Right-handed 310
Helix 30
AD3
A
440 443Right-handed 310
Helix 31
AD4
A
463 471Right-handed alpha
Helix 32
AD5
A
484 495Right-handed alpha
Helix 33
AD6
A
501 516Right-handed alpha
Helix 34
AD7
A
519 542Right-handed alpha
Helix 35
AD8
C
6 19Right-handed alpha
Helix 36
AD9
C
20 31Right-handed alpha
Helix 37
AE1
C
42 54Right-handed alpha
Helix 38
AE2
C
98 117Right-handed alpha
Helix 39
AE3
C
127 131Right-handed 310
Helix 40
AE4
C
171 187Right-handed alpha
Helix 41
AE5
C
210 215Right-handed alpha
Helix 42
AE6
C
225 230Right-handed 310
Helix 43
AE7
C
239 254Right-handed alpha
Helix 44
AE8
C
315 332Right-handed alpha
Helix 45
AE9
C
362 383Right-handed alpha
Helix 46
AF1
C
412 421Right-handed alpha
Helix 47
AF2
C
432 437Right-handed alpha
Helix 48
AF3
C
438 439Right-handed 310
Helix 49
AF4
C
440 442Right-handed 310
Helix 50
AF5
C
463 472Right-handed alpha
Helix 51
AF6
C
481 495Right-handed alpha
Helix 52
AF7
C
503 516Right-handed alpha
Helix 53
AF8
C
519 539Right-handed alpha
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There are 12 sheets in PDB entry 9E90. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 73first strand
Strand 2
B
94 97anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 153first strand
Strand 2
B
160 161anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
65 69anti-parallel
Strand 3
A
138 145anti-parallel
Strand 4
A
150 151anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
65 69anti-parallel
Strand 3
A
138 145anti-parallel
Strand 4
A
156 157anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
445 448parallel
Strand 3
A
451 454anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
397 398parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 341first strand
Strand 2
A
346 351anti-parallel
Strand 3
A
355 357anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 80first strand
Strand 2
C
62 69anti-parallel
Strand 3
C
137 145anti-parallel
Strand 4
C
150 153anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 80first strand
Strand 2
C
62 69anti-parallel
Strand 3
C
137 145anti-parallel
Strand 4
C
156 158anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
428 429first strand
Strand 2
C
89 90parallel
Strand 3
C
444 445parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
194 198first strand
Strand 2
C
394 398parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
335 341first strand
Strand 2
C
346 351anti-parallel
Strand 3
C
354 356anti-parallel
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