Analysis of interatomic Contacts of Structural Units in PDB entry:
9E93


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9E93 entry

There are 10 chains in PDB entry 9E93 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 U 2 A 10
D
 A 1 A 10
A
 ALA 2GLN 182
G
 U 2 A 10
H
 A 1 A 10
E
 ALA 2GLN 182
o
 ASP 7PHE 153
p
 ASN 3GLU 171
s
 ASP 7GLU 154
t
 ASN 3GLU 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9E93. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
54 66Right-handed alpha
Helix 3
AA3
A
85 99Right-handed alpha
Helix 4
AA4
A
116 129Right-handed alpha
Helix 5
AA5
A
137 147Right-handed alpha
Helix 6
AA6
A
158 182Right-handed alpha
Helix 7
AA7
E
5 13Right-handed alpha
Helix 8
AA8
E
54 66Right-handed alpha
Helix 9
AA9
E
85 99Right-handed alpha
Helix 10
AB1
E
116 129Right-handed alpha
Helix 11
AB2
E
137 149Right-handed alpha
Helix 12
AB3
E
158 182Right-handed alpha
Helix 13
AB4
o
8 15Right-handed alpha
Helix 14
AB5
o
15 24Right-handed alpha
Helix 15
AB6
o
36 50Right-handed alpha
Helix 16
AB7
o
129 135Right-handed alpha
Helix 17
AB8
o
136 149Right-handed alpha
Helix 18
AB9
p
14 31Right-handed alpha
Helix 19
AC1
p
99 112Right-handed alpha
Helix 20
AC2
p
118 126Right-handed alpha
Helix 21
AC3
p
135 139Right-handed 310
Helix 22
AC4
p
144 154Right-handed alpha
Helix 23
AC5
p
165 170Right-handed alpha
Helix 24
AC6
s
8 13Right-handed alpha
Helix 25
AC7
s
15 24Right-handed alpha
Helix 26
AC8
s
36 50Right-handed alpha
Helix 27
AC9
s
129 135Right-handed alpha
Helix 28
AD1
s
136 147Right-handed alpha
Helix 29
AD2
t
14 30Right-handed alpha
Helix 30
AD3
t
99 110Right-handed alpha
Helix 31
AD4
t
118 125Right-handed alpha
Helix 32
AD5
t
146 154Right-handed alpha
Helix 33
AD6
t
165 171Right-handed alpha
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There are 10 sheets in PDB entry 9E93. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
74 82anti-parallel
Strand 4
A
102 105parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
74 82anti-parallel
Strand 4
A
108 110parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 46first strand
Strand 2
E
30 36anti-parallel
Strand 3
E
74 82anti-parallel
Strand 4
E
102 110parallel
Strand 5
E
133 134parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
o
27 28first strand
Strand 2
o
120 121anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
o
64 70first strand
Strand 2
p
5 13anti-parallel
Strand 3
p
83 91anti-parallel
Strand 4
p
62 69anti-parallel
Strand 5
p
51 59anti-parallel
Strand 6
p
39 41anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
o
64 70first strand
Strand 2
p
5 13anti-parallel
Strand 3
p
83 91anti-parallel
Strand 4
p
94 97anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
o
86 87first strand
Strand 2
o
94 103anti-parallel
Strand 3
o
106 115anti-parallel
Strand 4
o
124 127anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
s
27 28first strand
Strand 2
s
120 127anti-parallel
Strand 3
s
106 115anti-parallel
Strand 4
s
94 103anti-parallel
Strand 5
s
85 87anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
s
56 58first strand
Strand 2
s
64 70anti-parallel
Strand 3
t
5 13anti-parallel
Strand 4
t
83 91anti-parallel
Strand 5
t
62 70anti-parallel
Strand 6
t
51 59anti-parallel
Strand 7
t
39 41anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
s
56 58first strand
Strand 2
s
64 70anti-parallel
Strand 3
t
5 13anti-parallel
Strand 4
t
83 91anti-parallel
Strand 5
t
94 97anti-parallel
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