Analysis of interatomic Contacts of Structural Units in PDB entry:
9E9B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9E9B entry

There is 1 chain in PDB entry 9E9B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ASN 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9E9B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 22Right-handed alpha
Helix 2
AA2
A
35 45Right-handed alpha
Helix 3
AA3
A
55 71Right-handed alpha
Helix 4
AA4
A
81 86Right-handed alpha
Helix 5
AA5
A
87 98Right-handed alpha
Helix 6
AA6
A
109 113Right-handed 310
Helix 7
AA7
A
127 131Right-handed 310
Helix 8
AA8
A
143 163Right-handed alpha
Helix 9
AA9
A
208 220Right-handed alpha
Helix 10
AB1
A
236 248Right-handed alpha
Helix 11
AB2
A
255 258Right-handed 310
Helix 12
AB3
A
272 277Right-handed alpha
Helix 13
AB4
A
279 284Right-handed alpha
Helix 14
AB5
A
285 287Right-handed 310
Helix 15
AB6
A
302 310Right-handed alpha
Helix 16
AB7
A
338 348Right-handed alpha
Helix 17
AB8
A
356 380Right-handed alpha
Helix 18
AB9
A
385 397Right-handed alpha
Helix 19
AC1
A
408 418Right-handed alpha
Helix 20
AC2
A
438 447Right-handed alpha
Helix 21
AC3
A
459 465Right-handed alpha
Helix 22
AC4
A
468 475Right-handed alpha
Helix 23
AC5
A
489 494Right-handed 310
Helix 24
AC6
A
495 500Right-handed 310
Helix 25
AC7
A
515 523Right-handed alpha
Helix 26
AC8
A
532 546Right-handed alpha
Helix 27
AC9
A
557 559Right-handed 310
Helix 28
AD1
A
560 579Right-handed alpha
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There are 3 sheets in PDB entry 9E9B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
26 29parallel
Strand 3
A
74 78parallel
Strand 4
A
101 107parallel
Strand 5
A
169 174parallel
Strand 6
A
133 136parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
251 253parallel
Strand 3
A
224 228parallel
Strand 4
A
290 294parallel
Strand 5
A
314 318parallel
Strand 6
A
333 335parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 428first strand
Strand 2
A
401 405parallel
Strand 3
A
453 458parallel
Strand 4
A
479 485parallel
Strand 5
A
549 555parallel
Strand 6
A
526 529parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il