Analysis of interatomic Contacts of Structural Units in PDB entry:
9E9F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E9F entry

There are 3 chains in PDB entry 9E9F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	LYS 1030
C	MET 1	ALA 1031
A	MET 1	ALA 1031

There are106 helices in PDB entry 9E9F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1	8	Right-handed alpha
Helix 2	AA2	B	8	30	Right-handed alpha
Helix 3	AA3	B	56	61	Right-handed alpha
Helix 4	AA4	B	61	70	Right-handed alpha
Helix 5	AA5	B	98	115	Right-handed alpha
Helix 6	AA6	B	118	125	Right-handed alpha
Helix 7	AA7	B	149	160	Right-handed alpha
Helix 8	AA8	B	160	168	Right-handed alpha
Helix 9	AA9	B	188	195	Right-handed alpha
Helix 10	AB1	B	199	211	Right-handed alpha
Helix 11	AB2	B	241	247	Right-handed alpha
Helix 12	AB3	B	262	266	Right-handed 310
Helix 13	AB4	B	271	275	Right-handed 310
Helix 14	AB5	B	297	315	Right-handed alpha
Helix 15	AB6	B	328	359	Right-handed alpha
Helix 16	AB7	B	360	386	Right-handed alpha
Helix 17	AB8	B	390	422	Right-handed alpha
Helix 18	AB9	B	425	453	Right-handed alpha
Helix 19	AC1	B	453	458	Right-handed alpha
Helix 20	AC2	B	459	495	Right-handed alpha
Helix 21	AC3	B	500	505	Right-handed alpha
Helix 22	AC4	B	508	534	Right-handed alpha
Helix 23	AC5	B	534	556	Right-handed alpha
Helix 24	AC6	B	580	596	Right-handed alpha
Helix 25	AC7	B	638	650	Right-handed alpha
Helix 26	AC8	B	686	704	Right-handed alpha
Helix 27	AC9	B	726	734	Right-handed alpha
Helix 28	AD1	B	736	748	Right-handed alpha
Helix 29	AD2	B	830	843	Right-handed alpha
Helix 30	AD3	B	855	887	Right-handed alpha
Helix 31	AD4	B	889	914	Right-handed alpha
Helix 32	AD5	B	918	950	Right-handed alpha
Helix 33	AD6	B	952	984	Right-handed alpha
Helix 34	AD7	B	990	1010	Right-handed alpha
Helix 35	AD8	B	1010	1026	Right-handed alpha
Helix 36	AD9	C	2	8	Right-handed alpha
Helix 37	AE1	C	8	30	Right-handed alpha
Helix 38	AE2	C	53	70	Right-handed alpha
Helix 39	AE3	C	98	113	Right-handed alpha
Helix 40	AE4	C	118	125	Right-handed alpha
Helix 41	AE5	C	149	168	Right-handed alpha
Helix 42	AE6	C	190	195	Right-handed alpha
Helix 43	AE7	C	198	210	Right-handed alpha
Helix 44	AE8	C	243	247	Right-handed 310
Helix 45	AE9	C	297	316	Right-handed alpha
Helix 46	AF1	C	328	358	Right-handed alpha
Helix 47	AF2	C	360	386	Right-handed alpha
Helix 48	AF3	C	390	422	Right-handed alpha
Helix 49	AF4	C	425	453	Right-handed alpha
Helix 50	AF5	C	454	458	Right-handed 310
Helix 51	AF6	C	460	475	Right-handed alpha
Helix 52	AF7	C	475	481	Right-handed alpha
Helix 53	AF8	C	486	495	Right-handed alpha
Helix 54	AF9	C	508	534	Right-handed alpha
Helix 55	AG1	C	534	555	Right-handed alpha
Helix 56	AG2	C	580	599	Right-handed alpha
Helix 57	AG3	C	634	637	Right-handed 310
Helix 58	AG4	C	638	646	Right-handed alpha
Helix 59	AG5	C	686	704	Right-handed alpha
Helix 60	AG6	C	726	733	Right-handed alpha
Helix 61	AG7	C	736	748	Right-handed alpha
Helix 62	AG8	C	796	798	Right-handed 310
Helix 63	AG9	C	830	843	Right-handed alpha
Helix 64	AH1	C	854	863	Right-handed alpha
Helix 65	AH2	C	865	887	Right-handed alpha
Helix 66	AH3	C	891	914	Right-handed alpha
Helix 67	AH4	C	918	950	Right-handed alpha
Helix 68	AH5	C	952	964	Right-handed alpha
Helix 69	AH6	C	965	984	Right-handed alpha
Helix 70	AH7	C	989	1027	Right-handed alpha
Helix 71	AH8	A	2	8	Right-handed alpha
Helix 72	AH9	A	8	30	Right-handed alpha
Helix 73	AI1	A	53	61	Right-handed alpha
Helix 74	AI2	A	61	70	Right-handed alpha
Helix 75	AI3	A	98	115	Right-handed alpha
Helix 76	AI4	A	118	125	Right-handed alpha
Helix 77	AI5	A	149	160	Right-handed alpha
Helix 78	AI6	A	160	168	Right-handed alpha
Helix 79	AI7	A	188	195	Right-handed alpha
Helix 80	AI8	A	198	211	Right-handed alpha
Helix 81	AI9	A	241	248	Right-handed alpha
Helix 82	AJ1	A	260	264	Right-handed alpha
Helix 83	AJ2	A	299	315	Right-handed alpha
Helix 84	AJ3	A	328	359	Right-handed alpha
Helix 85	AJ4	A	360	386	Right-handed alpha
Helix 86	AJ5	A	390	422	Right-handed alpha
Helix 87	AJ6	A	425	453	Right-handed alpha
Helix 88	AJ7	A	454	458	Right-handed 310
Helix 89	AJ8	A	459	495	Right-handed alpha
Helix 90	AJ9	A	508	534	Right-handed alpha
Helix 91	AK1	A	534	556	Right-handed alpha
Helix 92	AK2	A	580	598	Right-handed alpha
Helix 93	AK3	A	634	637	Right-handed 310
Helix 94	AK4	A	638	650	Right-handed alpha
Helix 95	AK5	A	686	704	Right-handed alpha
Helix 96	AK6	A	727	734	Right-handed alpha
Helix 97	AK7	A	737	749	Right-handed alpha
Helix 98	AK8	A	770	775	Right-handed alpha
Helix 99	AK9	A	778	783	Right-handed alpha
Helix 100	AL1	A	830	843	Right-handed alpha
Helix 101	AL2	A	855	887	Right-handed alpha
Helix 102	AL3	A	890	913	Right-handed alpha
Helix 103	AL4	A	918	950	Right-handed alpha
Helix 104	AL5	A	952	984	Right-handed alpha
Helix 105	AL6	A	989	1010	Right-handed alpha
Helix 106	AL7	A	1010	1027	Right-handed alpha

There are 21 sheets in PDB entry 9E9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	86	93	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	810	813	anti-parallel
Strand 6	B	816	817	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	176	first strand
Strand 2	B	286	292	anti-parallel
Strand 3	B	137	143	anti-parallel
Strand 4	B	320	322	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	176	first strand
Strand 2	B	286	292	anti-parallel
Strand 3	B	137	143	anti-parallel
Strand 4	B	326	327	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	278	280	anti-parallel
Strand 3	B	601	608	anti-parallel
Strand 4	B	620	626	anti-parallel
Strand 5	B	568	574	anti-parallel
Strand 6	B	657	662	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	712	first strand
Strand 2	B	820	825	anti-parallel
Strand 3	B	675	678	anti-parallel
Strand 4	B	852	854	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	720	first strand
Strand 2	B	804	806	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	725	first strand
Strand 2	B	799	801	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	130	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	75	82	anti-parallel
Strand 5	C	810	813	anti-parallel
Strand 6	C	816	817	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	173	first strand
Strand 2	C	287	292	anti-parallel
Strand 3	C	137	141	anti-parallel
Strand 4	C	322	327	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	601	608	first strand
Strand 2	C	620	626	anti-parallel
Strand 3	C	568	574	anti-parallel
Strand 4	C	657	661	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	675	678	first strand
Strand 2	C	820	825	anti-parallel
Strand 3	C	707	712	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	800	804	first strand
Strand 2	C	720	724	anti-parallel
Strand 3	A	234	236	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	784	786	first strand
Strand 2	C	792	794	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	86	92	anti-parallel
Strand 4	A	77	83	anti-parallel
Strand 5	A	809	813	anti-parallel
Strand 6	A	816	825	anti-parallel
Strand 7	A	707	712	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	86	92	anti-parallel
Strand 4	A	77	83	anti-parallel
Strand 5	A	809	813	anti-parallel
Strand 6	A	816	825	anti-parallel
Strand 7	A	676	681	anti-parallel
Strand 8	A	849	854	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	283	292	anti-parallel
Strand 3	A	137	143	anti-parallel
Strand 4	A	320	327	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	283	292	anti-parallel
Strand 3	A	277	280	anti-parallel
Strand 4	A	601	608	anti-parallel
Strand 5	A	620	626	anti-parallel
Strand 6	A	568	574	anti-parallel
Strand 7	A	657	662	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	268	first strand
Strand 2	A	183	187	anti-parallel
Strand 3	A	761	767	parallel
Strand 4	A	751	758	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	721	first strand
Strand 2	A	803	806	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	724	725	first strand
Strand 2	A	799	800	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	786	first strand
Strand 2	A	792	794	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E9F

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E9F