Analysis of interatomic Contacts of Structural Units in PDB entry:
9E9V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9E9V entry

There are 13 chains in PDB entry 9E9V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 4	GLN 182
B	THR 5	SER 183
D	C 4	A 10
C	G 3	G 8
E	THR 5	GLN 182
H	A 1	A 10
G	U 2	A 10
n	MET 17	ASP 111
m	ASP 2	SER 95
p	ASN 3	GLU 171
o	ASP 7	PHE 153
t	ASN 3	GLY 138
s	ASP 7	ALA 146

There are 44 helices in PDB entry 9E9V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	13	Right-handed alpha
Helix 2	AA2	A	54	66	Right-handed alpha
Helix 3	AA3	A	85	99	Right-handed alpha
Helix 4	AA4	A	116	129	Right-handed alpha
Helix 5	AA5	A	137	148	Right-handed alpha
Helix 6	AA6	A	158	170	Right-handed alpha
Helix 7	AA7	A	173	182	Right-handed alpha
Helix 8	AA8	B	6	13	Right-handed alpha
Helix 9	AA9	B	54	66	Right-handed alpha
Helix 10	AB1	B	85	99	Right-handed alpha
Helix 11	AB2	B	116	129	Right-handed alpha
Helix 12	AB3	B	137	149	Right-handed alpha
Helix 13	AB4	B	158	183	Right-handed alpha
Helix 14	AB5	E	7	12	Right-handed alpha
Helix 15	AB6	E	40	44	Right-handed 310
Helix 16	AB7	E	54	66	Right-handed alpha
Helix 17	AB8	E	85	99	Right-handed alpha
Helix 18	AB9	E	116	129	Right-handed alpha
Helix 19	AC1	E	140	149	Right-handed alpha
Helix 20	AC2	E	159	182	Right-handed alpha
Helix 21	AC3	n	33	37	Right-handed alpha
Helix 22	AC4	n	39	46	Right-handed alpha
Helix 23	AC5	n	66	84	Right-handed alpha
Helix 24	AC6	n	96	111	Right-handed alpha
Helix 25	AC7	m	23	35	Right-handed alpha
Helix 26	AC8	m	57	61	Right-handed 310
Helix 27	AC9	p	14	31	Right-handed alpha
Helix 28	AD1	p	99	112	Right-handed alpha
Helix 29	AD2	p	118	126	Right-handed alpha
Helix 30	AD3	p	135	139	Right-handed 310
Helix 31	AD4	p	144	154	Right-handed alpha
Helix 32	AD5	p	165	170	Right-handed alpha
Helix 33	AD6	o	8	15	Right-handed alpha
Helix 34	AD7	o	15	24	Right-handed alpha
Helix 35	AD8	o	36	50	Right-handed alpha
Helix 36	AD9	o	129	135	Right-handed alpha
Helix 37	AE1	o	136	149	Right-handed alpha
Helix 38	AE2	t	14	31	Right-handed alpha
Helix 39	AE3	t	99	110	Right-handed alpha
Helix 40	AE4	s	8	13	Right-handed alpha
Helix 41	AE5	s	15	24	Right-handed alpha
Helix 42	AE6	s	36	50	Right-handed alpha
Helix 43	AE7	s	129	135	Right-handed alpha
Helix 44	AE8	s	136	146	Right-handed alpha

There are 13 sheets in PDB entry 9E9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	30	36	anti-parallel
Strand 3	A	74	82	anti-parallel
Strand 4	A	103	105	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	30	36	anti-parallel
Strand 3	A	74	82	anti-parallel
Strand 4	A	108	110	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	30	34	anti-parallel
Strand 3	B	75	80	anti-parallel
Strand 4	B	103	104	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	35	first strand
Strand 2	E	74	82	anti-parallel
Strand 3	E	30	31	anti-parallel
Strand 4	E	46	47	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	35	first strand
Strand 2	E	74	82	anti-parallel
Strand 3	E	102	110	parallel
Strand 4	E	133	134	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	59	61	first strand
Strand 2	n	18	22	parallel
Strand 3	n	28	32	anti-parallel
Strand 4	m	12	18	parallel
Strand 5	m	3	9	anti-parallel
Strand 6	m	73	77	parallel
Strand 7	m	44	46	anti-parallel
Strand 8	m	49	50	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	39	41	first strand
Strand 2	p	51	59	anti-parallel
Strand 3	p	62	69	anti-parallel
Strand 4	p	83	91	anti-parallel
Strand 5	p	94	96	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	39	41	first strand
Strand 2	p	51	59	anti-parallel
Strand 3	p	62	69	anti-parallel
Strand 4	p	83	91	anti-parallel
Strand 5	p	5	13	anti-parallel
Strand 6	o	64	70	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	99	103	first strand
Strand 2	o	106	111	anti-parallel
Strand 3	o	124	127	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	51	59	first strand
Strand 2	t	62	69	anti-parallel
Strand 3	t	84	91	anti-parallel
Strand 4	t	94	96	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	51	59	first strand
Strand 2	t	62	69	anti-parallel
Strand 3	t	84	91	anti-parallel
Strand 4	t	5	12	anti-parallel
Strand 5	s	64	70	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	86	91	first strand
Strand 2	s	94	98	anti-parallel
Strand 3	s	106	114	anti-parallel
Strand 4	s	101	103	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	86	91	first strand
Strand 2	s	94	98	anti-parallel
Strand 3	s	106	114	anti-parallel
Strand 4	s	123	127	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9E9V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9E9V