Analysis of interatomic Contacts of Structural Units in PDB entry:
9EAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EAD entry

There are 3 chains in PDB entry 9EAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28LYS 258
B
 GLY 1PHE 238
C
 ARG 62GLY 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9EAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 37Right-handed alpha
Helix 2
AA2
A
107 114Right-handed alpha
Helix 3
AA3
A
162 164Right-handed 310
Helix 4
AA4
A
224 228Right-handed 310
Helix 5
AA5
B
43 49Right-handed alpha
Helix 6
AA6
B
93 98Right-handed alpha
Helix 7
AA7
B
99 106Right-handed alpha
Helix 8
AA8
B
145 152Right-handed alpha
Helix 9
AA9
B
234 238Right-handed 310
Helix 10
AB1
C
86 92Right-handed alpha
Helix 11
AB2
C
93 96Right-handed 310
Helix 12
AB3
C
99 107Right-handed alpha
Helix 13
AB4
C
153 159Right-handed alpha
Helix 14
AB5
C
164 170Right-handed alpha
Helix 15
AB6
C
195 202Right-handed 310
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There are 13 sheets in PDB entry 9EAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 47first strand
Strand 2
A
234 249anti-parallel
Strand 3
A
116 129anti-parallel
Strand 4
A
179 182anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 47first strand
Strand 2
A
234 249anti-parallel
Strand 3
A
116 129anti-parallel
Strand 4
A
191 192anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
216 220anti-parallel
Strand 3
A
137 141anti-parallel
Strand 4
A
169 171anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
84 85anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
C
186 189anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
158 160anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
213 220anti-parallel
Strand 3
B
72 74anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
213 220anti-parallel
Strand 3
B
115 121anti-parallel
Strand 4
B
164 168anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 88first strand
Strand 2
B
193 198anti-parallel
Strand 3
B
130 136anti-parallel
Strand 4
B
153 158anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
108 112anti-parallel
Strand 3
B
225 229anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 70first strand
Strand 2
C
257 272anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
214 219anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 70first strand
Strand 2
C
257 272anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
228 229anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 162first strand
Strand 2
C
79 84anti-parallel
Strand 3
C
236 248anti-parallel
Strand 4
C
127 137anti-parallel
Strand 5
C
205 208anti-parallel
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