Analysis of interatomic Contacts of Structural Units in PDB entry:
9EAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EAE entry

There are 2 chains in PDB entry 9EAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 0LYS 456
B
 SER 2SER 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 9EAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 22Right-handed alpha
Helix 2
AA2
A
54 58Right-handed 310
Helix 3
AA3
A
70 81Right-handed alpha
Helix 4
AA4
A
107 119Right-handed alpha
Helix 5
AA5
A
176 185Right-handed alpha
Helix 6
AA6
A
194 208Right-handed alpha
Helix 7
AA7
A
223 227Right-handed 310
Helix 8
AA8
A
232 238Right-handed alpha
Helix 9
AA9
A
241 255Right-handed alpha
Helix 10
AB1
A
268 276Right-handed alpha
Helix 11
AB2
A
287 301Right-handed alpha
Helix 12
AB3
A
348 357Right-handed alpha
Helix 13
AB4
A
358 369Right-handed alpha
Helix 14
AB5
A
381 401Right-handed alpha
Helix 15
AB6
A
407 411Right-handed 310
Helix 16
AB7
A
427 431Right-handed 310
Helix 17
AB8
A
446 454Right-handed 310
Helix 18
AB9
B
10 22Right-handed alpha
Helix 19
AC1
B
70 82Right-handed alpha
Helix 20
AC2
B
107 119Right-handed alpha
Helix 21
AC3
B
176 185Right-handed alpha
Helix 22
AC4
B
196 207Right-handed alpha
Helix 23
AC5
B
221 225Right-handed 310
Helix 24
AC6
B
232 239Right-handed alpha
Helix 25
AC7
B
241 255Right-handed alpha
Helix 26
AC8
B
268 276Right-handed alpha
Helix 27
AC9
B
287 301Right-handed alpha
Helix 28
AD1
B
348 356Right-handed alpha
Helix 29
AD2
B
358 368Right-handed alpha
Helix 30
AD3
B
381 401Right-handed alpha
Helix 31
AD4
B
407 411Right-handed 310
Helix 32
AD5
B
446 454Right-handed 310
Helix 33
AD6
C
242 252Right-handed alpha
Helix 34
AD7
C
344 359Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9EAE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
134 140anti-parallel
Strand 3
A
123 128anti-parallel
Strand 4
A
86 92parallel
Strand 5
A
30 39anti-parallel
Strand 6
A
43 52anti-parallel
Strand 7
A
6 9parallel
Strand 8
A
150 154parallel
Strand 9
A
158 162anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
66 69anti-parallel
Strand 3
A
97 100parallel
Strand 4
A
105 106anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
211 215parallel
Strand 3
A
187 191parallel
Strand 4
A
280 283parallel
Strand 5
A
305 311parallel
Strand 6
A
328 334anti-parallel
Strand 7
A
413 417anti-parallel
Strand 8
A
422 426anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
322 324anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 147first strand
Strand 2
B
134 140anti-parallel
Strand 3
B
122 128anti-parallel
Strand 4
B
86 91parallel
Strand 5
B
31 39anti-parallel
Strand 6
B
43 52anti-parallel
Strand 7
B
6 9parallel
Strand 8
B
150 154parallel
Strand 9
B
158 162anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
65 69anti-parallel
Strand 3
B
97 100parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 262first strand
Strand 2
B
211 215parallel
Strand 3
B
187 191parallel
Strand 4
B
280 283parallel
Strand 5
B
305 311parallel
Strand 6
B
328 334anti-parallel
Strand 7
B
413 417anti-parallel
Strand 8
B
422 426anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 317first strand
Strand 2
B
321 324anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
255 261first strand
Strand 2
C
264 273anti-parallel
Strand 3
C
282 289anti-parallel
Strand 4
C
301 304anti-parallel
Strand 5
C
328 332anti-parallel
Strand 6
C
321 323anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il