Analysis of interatomic Contacts of Structural Units in PDB entry:
9EAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EAJ entry

There are 4 chains in PDB entry 9EAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 30GLY 1306
B
 SER 29VAL 117
C
 GLU 4VAL 125
D
 ASP 2ARG 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9EAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 53Right-handed alpha
Helix 2
AA2
A
61 90Right-handed alpha
Helix 3
AA3
A
97 132Right-handed alpha
Helix 4
AA4
A
142 160Right-handed alpha
Helix 5
AA5
A
160 166Right-handed alpha
Helix 6
AA6
A
190 202Right-handed alpha
Helix 7
AA7
A
204 244Right-handed alpha
Helix 8
AA8
A
247 268Right-handed alpha
Helix 9
AA9
A
282 306Right-handed alpha
Helix 10
AB1
A
308 327Right-handed alpha
Helix 11
AB2
A
327 1236Right-handed alpha
Helix 12
AB3
A
1236 1268Right-handed alpha
Helix 13
AB4
A
1278 1283Right-handed alpha
Helix 14
AB5
A
1283 1292Right-handed alpha
Helix 15
AB6
A
1293 1306Right-handed alpha
Helix 16
AB7
C
31 34Right-handed 310
Helix 17
AB8
C
107 112Right-handed alpha
Helix 18
AB9
D
94 98Right-handed 310
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There are 7 sheets in PDB entry 9EAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
178 183anti-parallel
Strand 3
B
108 109parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 50first strand
Strand 2
B
33 37anti-parallel
Strand 3
B
93 94anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 10first strand
Strand 2
C
21 28anti-parallel
Strand 3
C
81 86anti-parallel
Strand 4
C
71 76anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 63first strand
Strand 2
C
48 55anti-parallel
Strand 3
C
36 42anti-parallel
Strand 4
C
95 102anti-parallel
Strand 5
C
121 123anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 7first strand
Strand 2
D
20 26anti-parallel
Strand 3
D
71 76anti-parallel
Strand 4
D
63 68anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
104 108parallel
Strand 3
D
86 91anti-parallel
Strand 4
D
34 39anti-parallel
Strand 5
D
46 49anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
104 108parallel
Strand 3
D
86 91anti-parallel
Strand 4
D
99 100anti-parallel
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