Analysis of interatomic Contacts of Structural Units in PDB entry:
9EAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EAK entry

There are 4 chains in PDB entry 9EAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 C 4 U 98
C
 A 6 G 37
D
 T 29 T 50
A
 MET 1GLY 1366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 9EAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 91Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
121 132Right-handed alpha
Helix 4
AA4
A
134 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
181 197Right-handed alpha
Helix 7
AA7
A
217 229Right-handed alpha
Helix 8
AA8
A
236 246Right-handed alpha
Helix 9
AA9
A
252 256Right-handed alpha
Helix 10
AB1
A
269 283Right-handed alpha
Helix 11
AB2
A
288 303Right-handed alpha
Helix 12
AB3
A
315 343Right-handed alpha
Helix 13
AB4
A
346 352Right-handed alpha
Helix 14
AB5
A
358 364Right-handed alpha
Helix 15
AB6
A
368 382Right-handed alpha
Helix 16
AB7
A
386 395Right-handed alpha
Helix 17
AB8
A
404 410Right-handed 310
Helix 18
AB9
A
411 426Right-handed alpha
Helix 19
AC1
A
430 436Right-handed alpha
Helix 20
AC2
A
436 446Right-handed alpha
Helix 21
AC3
A
477 482Right-handed alpha
Helix 22
AC4
A
483 494Right-handed alpha
Helix 23
AC5
A
512 526Right-handed alpha
Helix 24
AC6
A
541 552Right-handed alpha
Helix 25
AC7
A
561 571Right-handed alpha
Helix 26
AC8
A
592 602Right-handed alpha
Helix 27
AC9
A
603 609Right-handed alpha
Helix 28
AD1
A
612 626Right-handed alpha
Helix 29
AD2
A
629 637Right-handed alpha
Helix 30
AD3
A
638 643Right-handed 310
Helix 31
AD4
A
644 653Right-handed alpha
Helix 32
AD5
A
663 669Right-handed alpha
Helix 33
AD6
A
678 685Right-handed alpha
Helix 34
AD7
A
692 697Right-handed alpha
Helix 35
AD8
A
702 716Right-handed alpha
Helix 36
AD9
A
719 726Right-handed alpha
Helix 37
AE1
A
730 751Right-handed alpha
Helix 38
AE2
A
776 792Right-handed alpha
Helix 39
AE3
A
794 799Right-handed alpha
Helix 40
AE4
A
811 817Right-handed alpha
Helix 41
AE5
A
832 836Right-handed 310
Helix 42
AE6
A
873 889Right-handed alpha
Helix 43
AE7
A
893 902Right-handed alpha
Helix 44
AE8
A
909 922Right-handed alpha
Helix 45
AE9
A
925 940Right-handed alpha
Helix 46
AF1
A
959 971Right-handed alpha
Helix 47
AF2
A
980 1001Right-handed alpha
Helix 48
AF3
A
1004 1009Right-handed alpha
Helix 49
AF4
A
1017 1022Right-handed alpha
Helix 50
AF5
A
1043 1047Right-handed 310
Helix 51
AF6
A
1078 1088Right-handed alpha
Helix 52
AF7
A
1127 1132Right-handed alpha
Helix 53
AF8
A
1170 1177Right-handed alpha
Helix 54
AF9
A
1177 1186Right-handed alpha
Helix 55
AG1
A
1191 1195Right-handed 310
Helix 56
AG2
A
1207 1209Right-handed 310
Helix 57
AG3
A
1229 1241Right-handed alpha
Helix 58
AG4
A
1248 1262Right-handed alpha
Helix 59
AG5
A
1264 1280Right-handed alpha
Helix 60
AG6
A
1283 1297Right-handed alpha
Helix 61
AG7
A
1301 1312Right-handed alpha
Helix 62
AG8
A
1313 1316Right-handed 310
Helix 63
AG9
A
1341 1344Right-handed 310
Helix 64
AH1
A
1363 1365Right-handed 310
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There are 10 sheets in PDB entry 9EAK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 957first strand
Strand 2
A
758 761parallel
Strand 3
A
6 11parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
1357 1361parallel
Strand 4
A
1346 1350anti-parallel
Strand 5
A
1202 1205anti-parallel
Strand 6
A
1211 1216anti-parallel
Strand 7
A
1219 1222anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 251first strand
Strand 2
A
263 265anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
838 840first strand
Strand 2
A
855 857anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1051first strand
Strand 2
A
1057 1059anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1065first strand
Strand 2
A
1072 1075anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1121first strand
Strand 2
A
1133 1134anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1167first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1187 1188anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1167first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1196 1198anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1325first strand
Strand 2
A
1330 1331anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il