Analysis of interatomic Contacts of Structural Units in PDB entry:
9EAP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EAP entry

There are 3 chains in PDB entry 9EAP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	SER 532
B	GLU 15	VAL 530
C	GLU 27	VAL 530

There are 21 helices in PDB entry 9EAP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	42	Right-handed alpha
Helix 2	AA2	A	43	45	Right-handed 310
Helix 3	AA3	A	85	88	Right-handed 310
Helix 4	AA4	A	89	96	Right-handed alpha
Helix 5	AA5	A	140	144	Right-handed 310
Helix 6	AA6	A	236	240	Right-handed 310
Helix 7	AA7	B	37	42	Right-handed alpha
Helix 8	AA8	B	43	45	Right-handed 310
Helix 9	AA9	B	85	88	Right-handed 310
Helix 10	AB1	B	89	96	Right-handed alpha
Helix 11	AB2	B	137	142	Right-handed alpha
Helix 12	AB3	B	236	240	Right-handed 310
Helix 13	AB4	B	368	372	Right-handed 310
Helix 14	AB5	B	454	465	Right-handed alpha
Helix 15	AB6	C	37	42	Right-handed alpha
Helix 16	AB7	C	52	56	Right-handed 310
Helix 17	AB8	C	85	88	Right-handed 310
Helix 18	AB9	C	89	96	Right-handed alpha
Helix 19	AC1	C	140	144	Right-handed 310
Helix 20	AC2	C	236	240	Right-handed 310
Helix 21	AC3	C	454	465	Right-handed alpha

There are 23 sheets in PDB entry 9EAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	201	209	anti-parallel
Strand 3	A	67	69	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	201	209	anti-parallel
Strand 3	A	106	112	anti-parallel
Strand 4	A	157	161	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	83	first strand
Strand 2	A	180	191	anti-parallel
Strand 3	A	118	125	anti-parallel
Strand 4	A	146	150	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	101	103	anti-parallel
Strand 3	A	214	215	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	451	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	251	254	anti-parallel
Strand 4	A	507	508	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	296	first strand
Strand 2	A	304	310	anti-parallel
Strand 3	A	374	377	anti-parallel
Strand 4	A	350	358	anti-parallel
Strand 5	A	332	342	anti-parallel
Strand 6	A	389	402	anti-parallel
Strand 7	A	289	296	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	429	first strand
Strand 2	A	497	500	anti-parallel
Strand 3	A	490	491	anti-parallel
Strand 4	A	472	478	anti-parallel
Strand 5	A	485	487	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	429	first strand
Strand 2	A	497	500	anti-parallel
Strand 3	A	490	491	anti-parallel
Strand 4	A	472	478	anti-parallel
Strand 5	A	514	521	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	69	first strand
Strand 2	B	201	209	anti-parallel
Strand 3	B	106	111	anti-parallel
Strand 4	B	157	161	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	83	first strand
Strand 2	B	180	191	anti-parallel
Strand 3	B	118	127	anti-parallel
Strand 4	B	146	150	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	103	first strand
Strand 2	B	214	218	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	451	first strand
Strand 2	B	427	434	anti-parallel
Strand 3	B	252	254	anti-parallel
Strand 4	B	507	509	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	451	first strand
Strand 2	B	427	434	anti-parallel
Strand 3	B	496	500	anti-parallel
Strand 4	B	485	492	anti-parallel
Strand 5	B	472	478	anti-parallel
Strand 6	B	514	521	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	298	first strand
Strand 2	B	302	310	anti-parallel
Strand 3	B	374	378	anti-parallel
Strand 4	B	350	358	anti-parallel
Strand 5	B	332	342	anti-parallel
Strand 6	B	389	402	anti-parallel
Strand 7	B	289	298	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	69	first strand
Strand 2	C	201	209	anti-parallel
Strand 3	C	106	112	anti-parallel
Strand 4	C	157	161	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	83	first strand
Strand 2	C	180	187	anti-parallel
Strand 3	C	121	127	anti-parallel
Strand 4	C	146	150	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	101	103	anti-parallel
Strand 3	C	214	215	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	451	first strand
Strand 2	C	431	434	anti-parallel
Strand 3	C	252	254	anti-parallel
Strand 4	C	507	509	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	297	first strand
Strand 2	C	303	310	anti-parallel
Strand 3	C	374	377	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	358	first strand
Strand 2	C	332	338	anti-parallel
Strand 3	C	394	402	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	342	first strand
Strand 2	C	350	351	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	428	429	first strand
Strand 2	C	496	499	anti-parallel
Strand 3	C	490	492	anti-parallel
Strand 4	C	472	478	anti-parallel
Strand 5	C	485	487	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	428	429	first strand
Strand 2	C	496	499	anti-parallel
Strand 3	C	490	492	anti-parallel
Strand 4	C	472	478	anti-parallel
Strand 5	C	514	521	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EAP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EAP