Analysis of interatomic Contacts of Structural Units in PDB entry:
9EAV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EAV entry

There are 5 chains in PDB entry 9EAV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 4	LYS 456
B	GLY 4	LYS 456
C	THR 1	GLY 75
D	ALA 234	GLY 361
E	ALA 234	GLY 361

There are 39 helices in PDB entry 9EAV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	22	Right-handed alpha
Helix 2	AA2	A	54	58	Right-handed 310
Helix 3	AA3	A	70	82	Right-handed alpha
Helix 4	AA4	A	107	119	Right-handed alpha
Helix 5	AA5	A	176	185	Right-handed alpha
Helix 6	AA6	A	196	207	Right-handed alpha
Helix 7	AA7	A	221	225	Right-handed 310
Helix 8	AA8	A	232	238	Right-handed alpha
Helix 9	AA9	A	241	255	Right-handed alpha
Helix 10	AB1	A	268	276	Right-handed alpha
Helix 11	AB2	A	287	302	Right-handed alpha
Helix 12	AB3	A	348	356	Right-handed alpha
Helix 13	AB4	A	358	368	Right-handed alpha
Helix 14	AB5	A	381	401	Right-handed alpha
Helix 15	AB6	A	407	411	Right-handed 310
Helix 16	AB7	A	427	431	Right-handed 310
Helix 17	AB8	A	446	454	Right-handed 310
Helix 18	AB9	B	10	22	Right-handed alpha
Helix 19	AC1	B	54	58	Right-handed 310
Helix 20	AC2	B	70	81	Right-handed alpha
Helix 21	AC3	B	107	119	Right-handed alpha
Helix 22	AC4	B	176	185	Right-handed alpha
Helix 23	AC5	B	196	207	Right-handed alpha
Helix 24	AC6	B	221	227	Right-handed 310
Helix 25	AC7	B	232	238	Right-handed alpha
Helix 26	AC8	B	241	255	Right-handed alpha
Helix 27	AC9	B	268	276	Right-handed alpha
Helix 28	AD1	B	287	302	Right-handed alpha
Helix 29	AD2	B	348	356	Right-handed alpha
Helix 30	AD3	B	358	369	Right-handed alpha
Helix 31	AD4	B	381	401	Right-handed alpha
Helix 32	AD5	B	407	411	Right-handed 310
Helix 33	AD6	B	427	431	Right-handed 310
Helix 34	AD7	B	446	454	Right-handed 310
Helix 35	AD8	C	20	27	Right-handed alpha
Helix 36	AD9	D	242	252	Right-handed alpha
Helix 37	AE1	D	344	359	Right-handed alpha
Helix 38	AE2	E	242	252	Right-handed alpha
Helix 39	AE3	E	344	359	Right-handed alpha

There are 13 sheets in PDB entry 9EAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	147	first strand
Strand 2	A	134	140	anti-parallel
Strand 3	A	123	128	anti-parallel
Strand 4	A	86	92	parallel
Strand 5	A	30	39	anti-parallel
Strand 6	A	43	52	anti-parallel
Strand 7	A	6	9	parallel
Strand 8	A	150	154	parallel
Strand 9	A	158	162	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	66	69	anti-parallel
Strand 3	A	98	100	parallel
Strand 4	A	105	106	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	262	first strand
Strand 2	A	211	215	parallel
Strand 3	A	187	191	parallel
Strand 4	A	280	283	parallel
Strand 5	A	305	311	parallel
Strand 6	A	328	334	anti-parallel
Strand 7	A	413	417	anti-parallel
Strand 8	A	422	426	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	317	first strand
Strand 2	A	321	324	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	147	first strand
Strand 2	B	134	140	anti-parallel
Strand 3	B	123	128	anti-parallel
Strand 4	B	86	92	parallel
Strand 5	B	30	39	anti-parallel
Strand 6	B	43	52	anti-parallel
Strand 7	B	6	9	parallel
Strand 8	B	150	154	parallel
Strand 9	B	158	162	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	65	69	anti-parallel
Strand 3	B	98	100	parallel
Strand 4	B	105	106	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	263	first strand
Strand 2	B	211	216	parallel
Strand 3	B	187	191	parallel
Strand 4	B	280	283	parallel
Strand 5	B	305	311	parallel
Strand 6	B	328	334	anti-parallel
Strand 7	B	413	417	anti-parallel
Strand 8	B	422	426	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	317	first strand
Strand 2	B	321	324	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	9	13	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	19	first strand
Strand 2	C	54	56	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	49	first strand
Strand 2	C	35	41	anti-parallel
Strand 3	C	62	69	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	261	first strand
Strand 2	D	264	273	anti-parallel
Strand 3	D	282	289	anti-parallel
Strand 4	D	301	304	anti-parallel
Strand 5	D	327	332	anti-parallel
Strand 6	D	321	324	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	255	261	first strand
Strand 2	E	264	273	anti-parallel
Strand 3	E	282	289	anti-parallel
Strand 4	E	301	304	anti-parallel
Strand 5	E	327	332	anti-parallel
Strand 6	E	321	324	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EAV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EAV