Analysis of interatomic Contacts of Structural Units in PDB entry:
9EB7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EB7 entry

There are 2 chains in PDB entry 9EB7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 44	SER 511
B	GLY 43	SER 511

There are 43 helices in PDB entry 9EB7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	69	Right-handed alpha
Helix 2	AA2	A	80	82	Right-handed 310
Helix 3	AA3	A	84	90	Right-handed alpha
Helix 4	AA4	A	100	104	Right-handed 310
Helix 5	AA5	A	107	118	Right-handed alpha
Helix 6	AA6	A	133	143	Right-handed alpha
Helix 7	AA7	A	151	159	Right-handed alpha
Helix 8	AA8	A	160	171	Right-handed alpha
Helix 9	AA9	A	185	197	Right-handed alpha
Helix 10	AB1	A	218	220	Right-handed 310
Helix 11	AB2	A	221	238	Right-handed alpha
Helix 12	AB3	A	293	311	Right-handed alpha
Helix 13	AB4	A	340	349	Right-handed alpha
Helix 14	AB5	A	351	362	Right-handed alpha
Helix 15	AB6	A	368	372	Right-handed 310
Helix 16	AB7	A	439	454	Right-handed alpha
Helix 17	AB8	A	462	472	Right-handed alpha
Helix 18	AB9	A	472	478	Right-handed alpha
Helix 19	AC1	A	483	489	Right-handed alpha
Helix 20	AC2	A	490	492	Right-handed 310
Helix 21	AC3	A	499	511	Right-handed alpha
Helix 22	AC4	B	55	69	Right-handed alpha
Helix 23	AC5	B	80	82	Right-handed 310
Helix 24	AC6	B	84	90	Right-handed alpha
Helix 25	AC7	B	100	104	Right-handed 310
Helix 26	AC8	B	107	119	Right-handed alpha
Helix 27	AC9	B	133	143	Right-handed alpha
Helix 28	AD1	B	151	160	Right-handed alpha
Helix 29	AD2	B	160	172	Right-handed alpha
Helix 30	AD3	B	185	197	Right-handed alpha
Helix 31	AD4	B	218	220	Right-handed 310
Helix 32	AD5	B	221	234	Right-handed alpha
Helix 33	AD6	B	293	311	Right-handed alpha
Helix 34	AD7	B	340	349	Right-handed alpha
Helix 35	AD8	B	351	361	Right-handed alpha
Helix 36	AD9	B	368	372	Right-handed 310
Helix 37	AE1	B	387	391	Right-handed 310
Helix 38	AE2	B	439	454	Right-handed alpha
Helix 39	AE3	B	462	472	Right-handed alpha
Helix 40	AE4	B	472	478	Right-handed alpha
Helix 41	AE5	B	483	489	Right-handed alpha
Helix 42	AE6	B	490	492	Right-handed 310
Helix 43	AE7	B	499	510	Right-handed alpha

There are 10 sheets in PDB entry 9EB7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	97	first strand
Strand 2	A	72	78	parallel
Strand 3	A	49	52	parallel
Strand 4	A	122	124	parallel
Strand 5	A	146	147	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	216	first strand
Strand 2	A	200	204	anti-parallel
Strand 3	A	242	246	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	334	first strand
Strand 2	A	315	324	anti-parallel
Strand 3	A	252	260	anti-parallel
Strand 4	A	266	278	anti-parallel
Strand 5	A	281	287	anti-parallel
Strand 6	A	377	384	anti-parallel
Strand 7	A	429	437	anti-parallel
Strand 8	A	410	414	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	399	first strand
Strand 2	A	420	422	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	403	first strand
Strand 2	A	455	457	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	97	first strand
Strand 2	B	72	78	parallel
Strand 3	B	49	52	parallel
Strand 4	B	122	124	parallel
Strand 5	B	146	147	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	216	first strand
Strand 2	B	200	206	anti-parallel
Strand 3	B	240	246	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	334	first strand
Strand 2	B	315	324	anti-parallel
Strand 3	B	252	260	anti-parallel
Strand 4	B	266	278	anti-parallel
Strand 5	B	281	287	anti-parallel
Strand 6	B	377	384	anti-parallel
Strand 7	B	429	437	anti-parallel
Strand 8	B	410	414	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	398	first strand
Strand 2	B	421	422	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	403	first strand
Strand 2	B	455	457	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EB7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EB7