Analysis of interatomic Contacts of Structural Units in PDB entry:
9EB8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EB8 entry

There are 3 chains in PDB entry 9EB8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	SER 466
B	ASP 1	SER 466
C	GLN -1	TYR 381

There are 65 helices in PDB entry 9EB8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	24	Right-handed alpha
Helix 2	AA2	A	35	37	Right-handed 310
Helix 3	AA3	A	39	45	Right-handed alpha
Helix 4	AA4	A	55	59	Right-handed 310
Helix 5	AA5	A	62	74	Right-handed alpha
Helix 6	AA6	A	88	98	Right-handed alpha
Helix 7	AA7	A	106	115	Right-handed alpha
Helix 8	AA8	A	115	126	Right-handed alpha
Helix 9	AA9	A	140	152	Right-handed alpha
Helix 10	AB1	A	173	175	Right-handed 310
Helix 11	AB2	A	176	193	Right-handed alpha
Helix 12	AB3	A	248	266	Right-handed alpha
Helix 13	AB4	A	295	304	Right-handed alpha
Helix 14	AB5	A	306	316	Right-handed alpha
Helix 15	AB6	A	323	327	Right-handed 310
Helix 16	AB7	A	342	346	Right-handed 310
Helix 17	AB8	A	394	409	Right-handed alpha
Helix 18	AB9	A	417	427	Right-handed alpha
Helix 19	AC1	A	427	432	Right-handed alpha
Helix 20	AC2	A	438	443	Right-handed alpha
Helix 21	AC3	A	444	447	Right-handed 310
Helix 22	AC4	A	454	466	Right-handed alpha
Helix 23	AC5	B	10	24	Right-handed alpha
Helix 24	AC6	B	35	37	Right-handed 310
Helix 25	AC7	B	39	45	Right-handed alpha
Helix 26	AC8	B	55	59	Right-handed 310
Helix 27	AC9	B	62	74	Right-handed alpha
Helix 28	AD1	B	88	98	Right-handed alpha
Helix 29	AD2	B	106	115	Right-handed alpha
Helix 30	AD3	B	115	126	Right-handed alpha
Helix 31	AD4	B	140	152	Right-handed alpha
Helix 32	AD5	B	173	175	Right-handed 310
Helix 33	AD6	B	176	193	Right-handed alpha
Helix 34	AD7	B	248	266	Right-handed alpha
Helix 35	AD8	B	295	304	Right-handed alpha
Helix 36	AD9	B	306	316	Right-handed alpha
Helix 37	AE1	B	323	327	Right-handed 310
Helix 38	AE2	B	394	409	Right-handed alpha
Helix 39	AE3	B	417	427	Right-handed alpha
Helix 40	AE4	B	427	433	Right-handed alpha
Helix 41	AE5	B	438	444	Right-handed alpha
Helix 42	AE6	B	445	447	Right-handed 310
Helix 43	AE7	B	454	466	Right-handed alpha
Helix 44	AE8	C	10	24	Right-handed alpha
Helix 45	AE9	C	35	37	Right-handed 310
Helix 46	AF1	C	39	45	Right-handed alpha
Helix 47	AF2	C	55	59	Right-handed 310
Helix 48	AF3	C	62	74	Right-handed alpha
Helix 49	AF4	C	88	98	Right-handed alpha
Helix 50	AF5	C	106	115	Right-handed alpha
Helix 51	AF6	C	115	126	Right-handed alpha
Helix 52	AF7	C	140	152	Right-handed alpha
Helix 53	AF8	C	173	175	Right-handed 310
Helix 54	AF9	C	176	193	Right-handed alpha
Helix 55	AG1	C	248	266	Right-handed alpha
Helix 56	AG2	C	295	304	Right-handed alpha
Helix 57	AG3	C	306	316	Right-handed alpha
Helix 58	AG4	C	323	327	Right-handed 310
Helix 59	AG5	C	342	346	Right-handed 310
Helix 60	AG6	C	394	409	Right-handed alpha
Helix 61	AG7	C	417	427	Right-handed alpha
Helix 62	AG8	C	427	432	Right-handed alpha
Helix 63	AG9	C	438	443	Right-handed alpha
Helix 64	AH1	C	444	447	Right-handed 310
Helix 65	AH2	C	454	464	Right-handed alpha

There are 15 sheets in PDB entry 9EB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	52	first strand
Strand 2	A	27	33	parallel
Strand 3	A	4	7	parallel
Strand 4	A	77	79	parallel
Strand 5	A	101	102	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	171	first strand
Strand 2	A	155	163	anti-parallel
Strand 3	A	197	201	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	289	first strand
Strand 2	A	270	279	anti-parallel
Strand 3	A	207	215	anti-parallel
Strand 4	A	221	233	anti-parallel
Strand 5	A	236	242	anti-parallel
Strand 6	A	332	339	anti-parallel
Strand 7	A	384	392	anti-parallel
Strand 8	A	365	369	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	375	376	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	410	412	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	27	33	parallel
Strand 3	B	4	7	parallel
Strand 4	B	77	79	parallel
Strand 5	B	101	102	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	171	first strand
Strand 2	B	155	163	anti-parallel
Strand 3	B	197	201	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	289	first strand
Strand 2	B	270	279	anti-parallel
Strand 3	B	207	215	anti-parallel
Strand 4	B	221	233	anti-parallel
Strand 5	B	236	242	anti-parallel
Strand 6	B	332	339	anti-parallel
Strand 7	B	384	392	anti-parallel
Strand 8	B	365	369	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	354	first strand
Strand 2	B	375	377	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	410	412	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	52	first strand
Strand 2	C	27	33	parallel
Strand 3	C	4	7	parallel
Strand 4	C	77	79	parallel
Strand 5	C	101	102	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	171	first strand
Strand 2	C	155	163	anti-parallel
Strand 3	C	197	201	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	289	first strand
Strand 2	C	270	279	anti-parallel
Strand 3	C	207	215	anti-parallel
Strand 4	C	221	233	anti-parallel
Strand 5	C	236	242	anti-parallel
Strand 6	C	332	339	anti-parallel
Strand 7	C	384	392	anti-parallel
Strand 8	C	365	369	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	354	first strand
Strand 2	C	375	377	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	358	first strand
Strand 2	C	410	412	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EB8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EB8