Analysis of interatomic Contacts of Structural Units in PDB entry:
9EBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EBF entry

There are 4 chains in PDB entry 9EBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -1GLY 276
B
 PRO -1GLY 276
C
 PRO -1GLY 276
D
 PRO -1GLY 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 9EBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 34Right-handed 310
Helix 2
AA2
A
35 43Right-handed alpha
Helix 3
AA3
A
66 70Right-handed 310
Helix 4
AA4
A
75 93Right-handed alpha
Helix 5
AA5
A
103 116Right-handed alpha
Helix 6
AA6
A
136 153Right-handed alpha
Helix 7
AA7
A
153 167Right-handed alpha
Helix 8
AA8
A
170 178Right-handed alpha
Helix 9
AA9
A
183 201Right-handed alpha
Helix 10
AB1
A
201 207Right-handed alpha
Helix 11
AB2
A
211 217Right-handed alpha
Helix 12
AB3
A
218 220Right-handed 310
Helix 13
AB4
A
233 247Right-handed alpha
Helix 14
AB5
A
258 263Right-handed alpha
Helix 15
AB6
A
263 276Right-handed alpha
Helix 16
AB7
B
31 34Right-handed 310
Helix 17
AB8
B
35 43Right-handed alpha
Helix 18
AB9
B
66 71Right-handed 310
Helix 19
AC1
B
75 93Right-handed alpha
Helix 20
AC2
B
103 116Right-handed alpha
Helix 21
AC3
B
136 153Right-handed alpha
Helix 22
AC4
B
153 167Right-handed alpha
Helix 23
AC5
B
170 178Right-handed alpha
Helix 24
AC6
B
183 201Right-handed alpha
Helix 25
AC7
B
201 207Right-handed alpha
Helix 26
AC8
B
211 217Right-handed alpha
Helix 27
AC9
B
218 220Right-handed 310
Helix 28
AD1
B
233 247Right-handed alpha
Helix 29
AD2
B
258 263Right-handed alpha
Helix 30
AD3
B
263 276Right-handed alpha
Helix 31
AD4
C
31 34Right-handed 310
Helix 32
AD5
C
35 43Right-handed alpha
Helix 33
AD6
C
66 71Right-handed 310
Helix 34
AD7
C
75 93Right-handed alpha
Helix 35
AD8
C
103 116Right-handed alpha
Helix 36
AD9
C
136 153Right-handed alpha
Helix 37
AE1
C
153 167Right-handed alpha
Helix 38
AE2
C
170 179Right-handed alpha
Helix 39
AE3
C
183 201Right-handed alpha
Helix 40
AE4
C
201 207Right-handed alpha
Helix 41
AE5
C
212 217Right-handed alpha
Helix 42
AE6
C
218 220Right-handed 310
Helix 43
AE7
C
233 247Right-handed alpha
Helix 44
AE8
C
258 263Right-handed alpha
Helix 45
AE9
C
263 276Right-handed alpha
Helix 46
AF1
D
31 34Right-handed 310
Helix 47
AF2
D
35 43Right-handed alpha
Helix 48
AF3
D
66 71Right-handed 310
Helix 49
AF4
D
75 93Right-handed alpha
Helix 50
AF5
D
103 116Right-handed alpha
Helix 51
AF6
D
136 153Right-handed alpha
Helix 52
AF7
D
153 167Right-handed alpha
Helix 53
AF8
D
170 179Right-handed alpha
Helix 54
AF9
D
183 201Right-handed alpha
Helix 55
AG1
D
201 207Right-handed alpha
Helix 56
AG2
D
212 217Right-handed alpha
Helix 57
AG3
D
218 220Right-handed 310
Helix 58
AG4
D
233 247Right-handed alpha
Helix 59
AG5
D
258 263Right-handed alpha
Helix 60
AG6
D
263 276Right-handed alpha
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There are 7 sheets in PDB entry 9EBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
9 16anti-parallel
Strand 3
A
60 61anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
9 16anti-parallel
Strand 3
A
47 52anti-parallel
Strand 4
A
21 25parallel
Strand 5
A
97 102parallel
Strand 6
A
120 126parallel
Strand 7
B
222 227parallel
Strand 8
B
250 253parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
222 227parallel
Strand 3
B
120 126parallel
Strand 4
B
97 102parallel
Strand 5
B
21 25parallel
Strand 6
B
47 52parallel
Strand 7
B
9 17anti-parallel
Strand 8
B
2 6anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
222 227parallel
Strand 3
B
120 126parallel
Strand 4
B
97 102parallel
Strand 5
B
21 25parallel
Strand 6
B
47 52parallel
Strand 7
B
9 17anti-parallel
Strand 8
B
60 61anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 6first strand
Strand 2
C
9 17anti-parallel
Strand 3
C
60 61anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 6first strand
Strand 2
C
9 17anti-parallel
Strand 3
C
47 52anti-parallel
Strand 4
C
21 25parallel
Strand 5
C
97 102parallel
Strand 6
C
120 126parallel
Strand 7
D
222 227parallel
Strand 8
D
250 253parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
250 253first strand
Strand 2
C
222 227parallel
Strand 3
D
120 126parallel
Strand 4
D
97 102parallel
Strand 5
D
21 25parallel
Strand 6
D
47 51parallel
Strand 7
D
9 16anti-parallel
Strand 8
D
2 6anti-parallel
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