Analysis of interatomic Contacts of Structural Units in PDB entry:
9EBH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EBH entry

There are 5 chains in PDB entry 9EBH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	PHE 354
B	LEU 7	ASN 340
E	VAL 2	LEU 247
G	ILE 9	PHE 61
R	SER 9	TYR 293

There are 34 helices in PDB entry 9EBH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	33	Right-handed alpha
Helix 2	AA2	A	47	54	Right-handed alpha
Helix 3	AA3	A	207	216	Right-handed 310
Helix 4	AA4	A	241	255	Right-handed alpha
Helix 5	AA5	A	270	281	Right-handed alpha
Helix 6	AA6	A	282	286	Right-handed 310
Helix 7	AA7	A	295	310	Right-handed alpha
Helix 8	AA8	A	329	352	Right-handed alpha
Helix 9	AA9	B	8	26	Right-handed alpha
Helix 10	AB1	B	29	35	Right-handed alpha
Helix 11	AB2	E	28	32	Right-handed 310
Helix 12	AB3	E	220	224	Right-handed 310
Helix 13	AB4	G	10	14	Right-handed alpha
Helix 14	AB5	G	14	24	Right-handed alpha
Helix 15	AB6	G	29	44	Right-handed alpha
Helix 16	AB7	G	45	48	Right-handed 310
Helix 17	AB8	R	11	40	Right-handed alpha
Helix 18	AB9	R	41	44	Right-handed 310
Helix 19	AC1	R	46	64	Right-handed alpha
Helix 20	AC2	R	64	75	Right-handed alpha
Helix 21	AC3	R	79	114	Right-handed alpha
Helix 22	AC4	R	117	122	Right-handed alpha
Helix 23	AC5	R	123	142	Right-handed alpha
Helix 24	AC6	R	143	148	Right-handed 310
Helix 25	AC7	R	150	154	Right-handed 310
Helix 26	AC8	R	156	161	Right-handed alpha
Helix 27	AC9	R	167	172	Right-handed alpha
Helix 28	AD1	R	173	180	Right-handed alpha
Helix 29	AD2	R	181	186	Right-handed alpha
Helix 30	AD3	R	186	206	Right-handed alpha
Helix 31	AD4	R	227	255	Right-handed alpha
Helix 32	AD5	R	260	277	Right-handed alpha
Helix 33	AD6	R	277	282	Right-handed alpha
Helix 34	AD7	R	286	293	Right-handed alpha

There are 13 sheets in PDB entry 9EBH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	157	160	anti-parallel
Strand 3	B	165	168	anti-parallel
Strand 4	B	178	181	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	260	265	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	45	51	anti-parallel
Strand 3	E	33	39	anti-parallel
Strand 4	E	93	99	anti-parallel
Strand 5	E	110	111	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	45	51	anti-parallel
Strand 3	E	33	39	anti-parallel
Strand 4	E	93	99	anti-parallel
Strand 5	E	115	116	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	142	first strand
Strand 2	E	155	160	anti-parallel
Strand 3	E	211	216	anti-parallel
Strand 4	E	203	206	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	148	first strand
Strand 2	E	243	246	parallel
Strand 3	E	226	231	anti-parallel
Strand 4	E	174	179	anti-parallel
Strand 5	E	185	189	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EBH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EBH