Analysis of interatomic Contacts of Structural Units in PDB entry:
9EBI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9EBI entry

There are 5 chains in PDB entry 9EBI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	SER 9	TYR 293
A	SER 6	PHE 354
B	SER 2	ASN 340
G	SER 8	ARG 62
N	GLN 1	SER 128

There are 31 helices in PDB entry 9EBI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	9	40	Right-handed alpha
Helix 2	AA2	R	41	44	Right-handed 310
Helix 3	AA3	R	46	65	Right-handed alpha
Helix 4	AA4	R	65	75	Right-handed alpha
Helix 5	AA5	R	79	114	Right-handed alpha
Helix 6	AA6	R	117	122	Right-handed alpha
Helix 7	AA7	R	123	143	Right-handed alpha
Helix 8	AA8	R	144	148	Right-handed 310
Helix 9	AA9	R	150	154	Right-handed 310
Helix 10	AB1	R	167	172	Right-handed alpha
Helix 11	AB2	R	173	180	Right-handed alpha
Helix 12	AB3	R	186	207	Right-handed alpha
Helix 13	AB4	R	228	255	Right-handed alpha
Helix 14	AB5	R	260	274	Right-handed alpha
Helix 15	AB6	R	277	282	Right-handed alpha
Helix 16	AB7	R	286	293	Right-handed alpha
Helix 17	AB8	A	7	32	Right-handed alpha
Helix 18	AB9	A	42	49	Right-handed 310
Helix 19	AC1	A	193	199	Right-handed 310
Helix 20	AC2	A	225	239	Right-handed alpha
Helix 21	AC3	A	253	264	Right-handed alpha
Helix 22	AC4	A	267	272	Right-handed alpha
Helix 23	AC5	A	273	276	Right-handed 310
Helix 24	AC6	A	291	312	Right-handed alpha
Helix 25	AC7	A	330	351	Right-handed alpha
Helix 26	AC8	B	3	26	Right-handed alpha
Helix 27	AC9	B	29	34	Right-handed alpha
Helix 28	AD1	G	9	24	Right-handed alpha
Helix 29	AD2	G	29	44	Right-handed alpha
Helix 30	AD3	N	28	32	Right-handed 310
Helix 31	AD4	N	87	91	Right-handed 310

There are 11 sheets in PDB entry 9EBI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	77	78	first strand
Strand 2	R	164	165	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	174	first strand
Strand 2	A	177	183	anti-parallel
Strand 3	A	33	40	parallel
Strand 4	A	203	209	parallel
Strand 5	A	246	252	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	319	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	303	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9EBI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9EBI