Analysis of interatomic Contacts of Structural Units in PDB entry:
9EBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EBL entry

There are 8 chains in PDB entry 9EBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 264ASN 496
B
 ALA 262ALA 497
C
 LYS 3LEU 9
D
 HIS 2SER 12
E
 SER 264ASN 496
F
 ALA 262LEU 495
G
 LYS 3ASP 11
H
 HIS 2SER 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9EBL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
264 275Right-handed alpha
Helix 2
AA2
A
292 315Right-handed alpha
Helix 3
AA3
A
323 347Right-handed alpha
Helix 4
AA4
A
365 369Right-handed 310
Helix 5
AA5
A
372 390Right-handed alpha
Helix 6
AA6
A
393 407Right-handed alpha
Helix 7
AA7
A
425 443Right-handed alpha
Helix 8
AA8
A
447 460Right-handed alpha
Helix 9
AA9
A
461 482Right-handed alpha
Helix 10
AB1
A
488 496Right-handed alpha
Helix 11
AB2
B
264 275Right-handed alpha
Helix 12
AB3
B
290 314Right-handed alpha
Helix 13
AB4
B
323 347Right-handed alpha
Helix 14
AB5
B
365 370Right-handed 310
Helix 15
AB6
B
372 391Right-handed alpha
Helix 16
AB7
B
393 407Right-handed alpha
Helix 17
AB8
B
422 444Right-handed alpha
Helix 18
AB9
B
447 482Right-handed alpha
Helix 19
AC1
B
489 496Right-handed alpha
Helix 20
AC2
C
4 9Right-handed alpha
Helix 21
AC3
D
3 11Right-handed alpha
Helix 22
AC4
E
265 275Right-handed alpha
Helix 23
AC5
E
290 315Right-handed alpha
Helix 24
AC6
E
323 347Right-handed alpha
Helix 25
AC7
E
365 370Right-handed 310
Helix 26
AC8
E
372 390Right-handed alpha
Helix 27
AC9
E
393 407Right-handed alpha
Helix 28
AD1
E
425 443Right-handed alpha
Helix 29
AD2
E
447 461Right-handed alpha
Helix 30
AD3
E
461 482Right-handed alpha
Helix 31
AD4
E
488 496Right-handed alpha
Helix 32
AD5
F
264 274Right-handed alpha
Helix 33
AD6
F
290 316Right-handed alpha
Helix 34
AD7
F
318 322Right-handed 310
Helix 35
AD8
F
323 347Right-handed alpha
Helix 36
AD9
F
365 370Right-handed 310
Helix 37
AE1
F
372 390Right-handed alpha
Helix 38
AE2
F
393 407Right-handed alpha
Helix 39
AE3
F
426 443Right-handed alpha
Helix 40
AE4
F
447 482Right-handed alpha
Helix 41
AE5
F
488 494Right-handed alpha
Helix 42
AE6
G
4 11Right-handed alpha
Helix 43
AE7
H
3 11Right-handed alpha
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There are 4 sheets in PDB entry 9EBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 357first strand
Strand 2
A
360 363anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 357first strand
Strand 2
B
360 363anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
353 355first strand
Strand 2
E
361 363anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
353 357first strand
Strand 2
F
360 363anti-parallel
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