Analysis of interatomic Contacts of Structural Units in PDB entry:
9EBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9EBM entry

There are 2 chains in PDB entry 9EBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1GLN 215
A
 MET 1THR 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9EBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
4 8Right-handed 310
Helix 2
AA2
B
12 22Right-handed alpha
Helix 3
AA3
B
71 77Right-handed alpha
Helix 4
AA4
B
95 99Right-handed 310
Helix 5
AA5
B
124 144Right-handed alpha
Helix 6
AA6
B
148 151Right-handed 310
Helix 7
AA7
B
152 160Right-handed alpha
Helix 8
AA8
B
184 197Right-handed alpha
Helix 9
AA9
B
200 211Right-handed alpha
Helix 10
AB1
A
4 8Right-handed 310
Helix 11
AB2
A
12 22Right-handed alpha
Helix 12
AB3
A
47 52Right-handed alpha
Helix 13
AB4
A
71 77Right-handed alpha
Helix 14
AB5
A
95 99Right-handed 310
Helix 15
AB6
A
124 144Right-handed alpha
Helix 16
AB7
A
148 151Right-handed 310
Helix 17
AB8
A
152 160Right-handed alpha
Helix 18
AB9
A
184 197Right-handed alpha
Helix 19
AC1
A
200 212Right-handed alpha
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There are 2 sheets in PDB entry 9EBM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 29first strand
Strand 2
B
38 46anti-parallel
Strand 3
B
62 68anti-parallel
Strand 4
B
163 178anti-parallel
Strand 5
B
107 122anti-parallel
Strand 6
B
82 94anti-parallel
Strand 7
B
24 29anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 29first strand
Strand 2
A
38 46anti-parallel
Strand 3
A
62 68anti-parallel
Strand 4
A
163 178anti-parallel
Strand 5
A
107 122anti-parallel
Strand 6
A
82 94anti-parallel
Strand 7
A
24 29anti-parallel
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